Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VKP53_RS08615 Genome accession   NZ_CP142354
Coordinates   1759059..1759772 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6745-99     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754059..1764772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP53_RS08605 (VKP53_08605) treC 1755128..1756756 (-) 1629 WP_326674797.1 alpha,alpha-phosphotrehalase -
  VKP53_RS08610 (VKP53_08610) treP 1756824..1758848 (-) 2025 WP_326674798.1 PTS system trehalose-specific EIIBC component -
  VKP53_RS08615 (VKP53_08615) treR 1759059..1759772 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  VKP53_RS08620 (VKP53_08620) - 1760051..1760382 (-) 332 Protein_1644 winged helix-turn-helix transcriptional regulator -
  VKP53_RS08625 (VKP53_08625) - 1760569..1761426 (+) 858 WP_326674799.1 VOC family protein -
  VKP53_RS08630 (VKP53_08630) yaaA 1761468..1762199 (+) 732 WP_111703691.1 peroxide stress protein YaaA -
  VKP53_RS08635 (VKP53_08635) nrdG 1762373..1762987 (-) 615 WP_129321530.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  VKP53_RS08640 (VKP53_08640) - 1763002..1763496 (-) 495 WP_031488766.1 GNAT family N-acetyltransferase -
  VKP53_RS08645 (VKP53_08645) - 1763505..1764440 (-) 936 WP_326674800.1 Gfo/Idh/MocA family oxidoreductase -
  VKP53_RS08650 (VKP53_08650) - 1764469..1764615 (-) 147 WP_011106921.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=925238 VKP53_RS08615 WP_002992823.1 1759059..1759772(+) (treR) [Streptococcus pyogenes strain 6745-99]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=925238 VKP53_RS08615 WP_002992823.1 1759059..1759772(+) (treR) [Streptococcus pyogenes strain 6745-99]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675