Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB5J49_RS05840 Genome accession   NZ_CP163439
Coordinates   1361005..1361985 (-) Length   326 a.a.
NCBI ID   WP_369167368.1    Uniprot ID   -
Organism   Streptomyces sp. R28     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1356005..1366985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J49_RS05830 (AB5J49_05830) - 1357510..1359024 (+) 1515 WP_369167366.1 glycoside hydrolase family 43 protein -
  AB5J49_RS05835 (AB5J49_05835) - 1359158..1360936 (+) 1779 WP_369167367.1 cellulase family glycosylhydrolase -
  AB5J49_RS05840 (AB5J49_05840) cytR 1361005..1361985 (-) 981 WP_369167368.1 LacI family DNA-binding transcriptional regulator Regulator
  AB5J49_RS05845 (AB5J49_05845) - 1362272..1363392 (+) 1121 Protein_1168 cellulose binding domain-containing protein -
  AB5J49_RS05850 (AB5J49_05850) - 1363543..1363782 (-) 240 WP_369167369.1 cellulose binding domain-containing protein -
  AB5J49_RS05855 (AB5J49_05855) - 1363818..1364576 (-) 759 WP_369167370.1 PHB depolymerase family esterase -
  AB5J49_RS05860 (AB5J49_05860) - 1364615..1366033 (-) 1419 WP_369167371.1 glycoside hydrolase family 43 protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35360.37 Da        Isoelectric Point: 6.4155

>NTDB_id=925235 AB5J49_RS05840 WP_369167368.1 1361005..1361985(-) (cytR) [Streptomyces sp. R28]
MTIAYIAESAGVSVPTVSKVLNGRSGVSDETRARVEQLIHQHGYRKAPQNRSNLVELVFRELESMWAVEIIRGVERVARR
NRIGVLVSEFGLHDTSGMTIDDTVGRRPRCVLSVAQLSPAEREQLTAKGIPFVVFDPIDELPDDVPFVGATNWRGGQAAT
RHLVGLGHRRIAMISGPDHPFCLARLSGYSSALAEAGLPMEPGLVVKTQLTREHGYTAARELLSRTDRPTAVFTANDMQA
LGVYQAARELGLRIPHDLSVVGFDDVPAVAWMDPPLTTVHQPLAEMAAAATELALTLGRGEQVPQVGLEIATTLTVREST
APPKTE

Nucleotide


Download         Length: 981 bp        

>NTDB_id=925235 AB5J49_RS05840 WP_369167368.1 1361005..1361985(-) (cytR) [Streptomyces sp. R28]
GTGACGATCGCGTACATCGCCGAATCCGCGGGCGTCTCCGTGCCCACCGTGTCCAAGGTGCTCAACGGCCGGTCCGGGGT
GTCGGACGAGACCCGGGCCCGCGTCGAGCAGCTCATCCACCAGCACGGTTACCGCAAGGCTCCCCAGAACCGCAGCAATC
TCGTGGAGCTTGTGTTCCGCGAGTTGGAGAGCATGTGGGCCGTGGAGATCATCCGCGGTGTCGAGCGCGTGGCCCGCAGG
AACCGGATCGGTGTGCTGGTGTCGGAGTTCGGGCTCCATGACACCTCGGGCATGACCATCGACGACACGGTCGGTCGGCG
CCCCCGGTGCGTCCTGTCGGTGGCGCAGCTCTCCCCGGCGGAGCGCGAACAGCTGACGGCCAAGGGCATTCCGTTCGTCG
TCTTCGACCCGATCGACGAACTGCCCGACGACGTGCCGTTCGTGGGTGCCACGAACTGGAGAGGCGGGCAGGCGGCGACC
CGGCACCTGGTCGGGCTGGGCCATCGGCGCATTGCCATGATCAGCGGGCCGGATCACCCCTTCTGCCTGGCCCGGCTGTC
CGGTTACTCGTCAGCTCTCGCGGAAGCCGGCCTGCCGATGGAACCCGGCCTGGTGGTGAAGACCCAGCTCACCCGCGAGC
ACGGGTACACCGCGGCGCGGGAGCTGCTGTCCCGCACCGATCGCCCCACCGCCGTGTTCACCGCGAACGACATGCAGGCG
CTCGGTGTCTACCAGGCCGCGCGTGAGCTGGGCCTGCGCATCCCGCACGATCTCAGCGTGGTGGGCTTCGACGACGTACC
GGCCGTGGCCTGGATGGATCCGCCCTTGACCACCGTCCACCAGCCGTTGGCCGAGATGGCGGCAGCCGCCACCGAGCTGG
CCCTGACGCTCGGCCGGGGCGAGCAGGTGCCGCAGGTGGGGCTGGAGATCGCCACCACTCTGACCGTCCGGGAGAGCACG
GCTCCGCCGAAAACGGAGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(160-320)

Bacterial regulatory proteins, lacI family (LacI)

(2-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.756

100

0.377
  cytR Vibrio parahaemolyticus RIMD 2210633

35.522

100

0.365