Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   VKP53_RS07705 Genome accession   NZ_CP142354
Coordinates   1550954..1551505 (-) Length   183 a.a.
NCBI ID   WP_111688228.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6745-99     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545954..1556505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP53_RS07670 (VKP53_07670) - 1545958..1546701 (-) 744 WP_014635285.1 class I SAM-dependent DNA methyltransferase -
  VKP53_RS07675 (VKP53_07675) rsfS 1546749..1547102 (-) 354 WP_015055915.1 ribosome silencing factor -
  VKP53_RS07680 (VKP53_07680) yqeK 1547126..1547719 (-) 594 WP_115230684.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  VKP53_RS07685 (VKP53_07685) - 1547719..1548348 (-) 630 WP_326674767.1 nicotinate-nucleotide adenylyltransferase -
  VKP53_RS07690 (VKP53_07690) yhbY 1548417..1548725 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  VKP53_RS07695 (VKP53_07695) yqeH 1548750..1549868 (-) 1119 WP_111674473.1 ribosome biogenesis GTPase YqeH -
  VKP53_RS07700 (VKP53_07700) - 1549868..1550395 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  VKP53_RS07705 (VKP53_07705) comX/sigX/comX2/sigX2 1550954..1551505 (-) 552 WP_111688228.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22307.16 Da        Isoelectric Point: 10.0375

>NTDB_id=925235 VKP53_RS07705 WP_111688228.1 1550954..1551505(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 6745-99]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNLQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=925235 VKP53_RS07705 WP_111688228.1 1550954..1551505(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain 6745-99]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTTGCAAGAGCGTATGCAATTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAAGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.