Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VKP39_RS08130 Genome accession   NZ_CP142353
Coordinates   1651975..1652688 (+) Length   237 a.a.
NCBI ID   WP_326623858.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1646975..1657688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS08120 (VKP39_08120) treC 1648044..1649672 (-) 1629 WP_021733072.1 alpha,alpha-phosphotrehalase -
  VKP39_RS08125 (VKP39_08125) treP 1649740..1651764 (-) 2025 WP_023080297.1 PTS system trehalose-specific EIIBC component -
  VKP39_RS08130 (VKP39_08130) treR 1651975..1652688 (+) 714 WP_326623858.1 trehalose operon repressor Regulator
  VKP39_RS08135 (VKP39_08135) - 1652968..1653306 (-) 339 Protein_1548 winged helix-turn-helix transcriptional regulator -
  VKP39_RS08140 (VKP39_08140) - 1653492..1654349 (+) 858 WP_023605347.1 VOC family protein -
  VKP39_RS08145 (VKP39_08145) yaaA 1654391..1655122 (+) 732 WP_002982222.1 peroxide stress protein YaaA -
  VKP39_RS08150 (VKP39_08150) nrdG 1655296..1655910 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  VKP39_RS08155 (VKP39_08155) - 1655910..1656419 (-) 510 WP_002991345.1 GNAT family N-acetyltransferase -
  VKP39_RS08160 (VKP39_08160) - 1656428..1657363 (-) 936 WP_326623859.1 Gfo/Idh/MocA family oxidoreductase -
  VKP39_RS08165 (VKP39_08165) - 1657392..1657538 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27668.88 Da        Isoelectric Point: 9.7182

>NTDB_id=925184 VKP39_RS08130 WP_326623858.1 1651975..1652688(+) (treR) [Streptococcus pyogenes strain D641]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRYKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=925184 VKP39_RS08130 WP_326623858.1 1651975..1652688(+) (treR) [Streptococcus pyogenes strain D641]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTTA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.949

98.734

0.671