Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VKP39_RS06650 Genome accession   NZ_CP142353
Coordinates   1326990..1327715 (-) Length   241 a.a.
NCBI ID   WP_002983379.1    Uniprot ID   A0A4U7HHL6
Organism   Streptococcus pyogenes strain D641     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321990..1332715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS06615 (VKP39_06615) rnpM 1322023..1322319 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  VKP39_RS06620 (VKP39_06620) nusA 1322335..1323492 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  VKP39_RS06625 (VKP39_06625) rimP 1323667..1324203 (-) 537 WP_030127299.1 ribosome maturation factor RimP -
  VKP39_RS06635 (VKP39_06635) trmB 1324463..1325098 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  VKP39_RS06640 (VKP39_06640) ccrZ 1325098..1325889 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  VKP39_RS06645 (VKP39_06645) - 1325953..1326987 (-) 1035 WP_002988663.1 ABC transporter permease -
  VKP39_RS06650 (VKP39_06650) pptA 1326990..1327715 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  VKP39_RS06655 (VKP39_06655) - 1327787..1328206 (+) 420 WP_002988659.1 HIT family protein -
  VKP39_RS06660 (VKP39_06660) - 1328203..1328559 (+) 357 WP_002988657.1 hypothetical protein -
  VKP39_RS06665 (VKP39_06665) brpA 1328670..1329953 (-) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  VKP39_RS06670 (VKP39_06670) - 1329962..1330486 (-) 525 WP_002988650.1 GNAT family N-acetyltransferase -
  VKP39_RS06675 (VKP39_06675) tsaE 1330461..1330922 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  VKP39_RS06680 (VKP39_06680) - 1331076..1332536 (-) 1461 WP_002988645.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26678.75 Da        Isoelectric Point: 4.5624

>NTDB_id=925177 VKP39_RS06650 WP_002983379.1 1326990..1327715(-) (pptA) [Streptococcus pyogenes strain D641]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=925177 VKP39_RS06650 WP_002983379.1 1326990..1327715(-) (pptA) [Streptococcus pyogenes strain D641]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCCTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U7HHL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.803

99.17

0.722
  pptA Streptococcus thermophilus LMD-9

71.967

99.17

0.714