Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AB5J56_RS16425 Genome accession   NZ_CP163435
Coordinates   3684163..3685137 (-) Length   324 a.a.
NCBI ID   WP_369233475.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3679163..3690137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS16405 (AB5J56_16400) mshB 3679479..3680372 (-) 894 WP_369233471.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  AB5J56_RS16410 (AB5J56_16405) - 3680446..3680640 (-) 195 WP_369233472.1 hypothetical protein -
  AB5J56_RS16415 (AB5J56_16410) - 3680823..3682946 (+) 2124 WP_369233473.1 prolyl oligopeptidase family serine peptidase -
  AB5J56_RS16420 (AB5J56_16415) - 3683097..3684170 (-) 1074 WP_369233474.1 ABC transporter ATP-binding protein -
  AB5J56_RS16425 (AB5J56_16420) amiE 3684163..3685137 (-) 975 WP_369233475.1 ABC transporter ATP-binding protein Regulator
  AB5J56_RS16430 (AB5J56_16425) - 3685147..3686067 (-) 921 WP_369233476.1 ABC transporter permease -
  AB5J56_RS16435 (AB5J56_16430) - 3686180..3687103 (-) 924 WP_369233477.1 ABC transporter permease -
  AB5J56_RS16440 (AB5J56_16435) - 3687158..3688792 (-) 1635 WP_369233478.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35647.39 Da        Isoelectric Point: 5.6573

>NTDB_id=925165 AB5J56_RS16425 WP_369233475.1 3684163..3685137(-) (amiE) [Streptomyces sp. R21]
MLLEVRDLHVEFRTRDGVAKAVNGVNYSVDEGETLAVLGESGSGKSVTAQAVMGILDMPPGKITSGEILFQGKDLLKLKE
EERRKVRGAEMAMIFQDALSSLNPVLSVGDQLGEMFTVHRGMSRKDARAKAIELMERVRIPAAAERVRDYPHQFSGGMRQ
RIMIAMALALEPALIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVESAPVHD
IYKAPAHPYTKGLLESIPRLDQKGQELYAIKGLPPNLMHIPPGCAFNPRCPMAQDVCRTDVPPLAEVDEERRSACFFWRE
CLHG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=925165 AB5J56_RS16425 WP_369233475.1 3684163..3685137(-) (amiE) [Streptomyces sp. R21]
ATGCTGCTCGAAGTGCGTGATCTGCACGTGGAGTTCAGGACCCGGGACGGTGTCGCCAAGGCCGTCAACGGGGTCAACTA
CAGCGTGGACGAGGGTGAGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCGGTGACCGCGCAGGCCGTGATGG
GCATCCTCGACATGCCGCCCGGGAAGATCACCAGCGGCGAGATCCTCTTCCAGGGCAAGGACCTGCTCAAGCTGAAGGAG
GAGGAGCGGCGCAAGGTCCGGGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCTCCCTCAACCCGGTGCTCTC
CGTCGGCGACCAGCTCGGCGAGATGTTCACCGTGCACCGCGGGATGTCCCGCAAGGACGCCCGCGCGAAGGCGATCGAGC
TGATGGAACGGGTGCGGATCCCGGCCGCCGCCGAGCGGGTGCGCGACTACCCCCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGCTGGCGCTCGAACCCGCGCTGATCATCGCCGACGAACCGACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTGCTGGCCGAGTTGCAGCGCGAGCTCAACATGGGGCTCATCCTCATCACCCACGACC
TCGGCGTGGTCGCGGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGTCGGCGCCGGTGCACGAC
ATCTACAAGGCGCCCGCCCACCCGTACACCAAGGGCCTGTTGGAGTCGATCCCGCGCCTGGACCAGAAGGGTCAGGAGCT
CTACGCCATCAAGGGCCTGCCGCCGAACCTGATGCACATCCCGCCGGGCTGCGCCTTCAACCCCCGCTGCCCGATGGCCC
AGGACGTCTGCCGGACCGACGTACCGCCGCTCGCGGAGGTGGACGAGGAACGCAGAAGTGCCTGCTTCTTCTGGAGGGAG
TGCCTCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.729

99.074

0.463
  amiE Streptococcus thermophilus LMG 18311

46.417

99.074

0.46
  amiE Streptococcus thermophilus LMD-9

46.417

99.074

0.46
  oppD Streptococcus mutans UA159

46.835

97.531

0.457