Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   VKP39_RS02285 Genome accession   NZ_CP142353
Coordinates   431160..431969 (+) Length   269 a.a.
NCBI ID   WP_002985641.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 426160..436969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS02265 (VKP39_02265) - 426602..427849 (+) 1248 WP_002995606.1 AMP-binding protein -
  VKP39_RS02270 (VKP39_02270) - 427905..428939 (+) 1035 WP_011284595.1 DUF3114 domain-containing protein -
  VKP39_RS02275 (VKP39_02275) vicR 429101..429811 (+) 711 WP_002985645.1 response regulator YycF Regulator
  VKP39_RS02280 (VKP39_02280) vicK 429804..431156 (+) 1353 WP_030126775.1 cell wall metabolism sensor histidine kinase VicK Regulator
  VKP39_RS02285 (VKP39_02285) vicX 431160..431969 (+) 810 WP_002985641.1 MBL fold metallo-hydrolase Regulator
  VKP39_RS02290 (VKP39_02290) rnc 432412..433104 (+) 693 WP_002990670.1 ribonuclease III -
  VKP39_RS02295 (VKP39_02295) smc 433105..436644 (+) 3540 WP_030126774.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30095.20 Da        Isoelectric Point: 5.5314

>NTDB_id=925160 VKP39_RS02285 WP_002985641.1 431160..431969(+) (vicX) [Streptococcus pyogenes strain D641]
MNESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
IYANEKTWQLMDECNMLGKLDASQKHIFQRDKVLTFGDVDIESFGVSHDAIDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDLGHLSNEDGAGAMIRSLGYNTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=925160 VKP39_RS02285 WP_002985641.1 431160..431969(+) (vicX) [Streptococcus pyogenes strain D641]
ATGAATGAGAGTGGTTTTAAATATAGTATTTTAGCATCTGGGTCCACAGGAAATTGTTTTTATTTAGAAACACCTAAAAA
ACGCTTATTGATTGATGCAGGGCTTACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCTGAGGATT
TGGATGCTATTTTGATTACCCATGAGCACTCTGACCATATTAAGGGTGTAGGCGTTATGGCCCGCAAATACCATTTGGAT
ATCTATGCTAATGAAAAAACATGGCAGCTGATGGATGAGTGCAATATGCTAGGTAAGCTTGATGCCTCACAAAAACATAT
TTTCCAAAGGGATAAAGTTTTGACCTTTGGAGATGTTGATATCGAAAGTTTTGGAGTCAGCCATGACGCTATTGATCCTC
AATTTTATCGGATTATGAAAGATAATAAGTCTTTTGTGATGTTGACAGATACAGGATATGTCAGTGATAGGATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAATCCAATCATGATATTGAAATTTTGAGATCAGGCTCTTATCCTTGGAG
CTTGAAGCAGCGTATTTTATCTGATTTAGGACATTTATCAAATGAAGATGGAGCGGGAGCCATGATTAGAAGCCTGGGGT
ACAATACCAAAAAAATATACCTAGGTCATCTGAGTAAAGAAAATAACATCAAAGAGTTAGCGCATATGACTATGGTCAAT
CAACTGGCTATGGCAGATTTAGCAGTAGGTACAGACTTTACGGTCCATGATACCTCTCCAGATACTGCTTGTCCATTAAC
TGATATTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758