Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   VKP39_RS01360 Genome accession   NZ_CP142353
Coordinates   253895..254818 (+) Length   307 a.a.
NCBI ID   WP_109828742.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 248895..259818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS01345 (VKP39_01345) amiC 250395..251897 (+) 1503 WP_002992227.1 ABC transporter permease Regulator
  VKP39_RS01350 (VKP39_01350) amiD 251897..252823 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  VKP39_RS01355 (VKP39_01355) amiE 252832..253902 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  VKP39_RS01360 (VKP39_01360) amiF 253895..254818 (+) 924 WP_109828742.1 ABC transporter ATP-binding protein Regulator
  VKP39_RS08660 - 254856..254945 (-) 90 WP_109821088.1 IS3 family transposase -
  VKP39_RS01365 (VKP39_01365) - 254966..255211 (-) 246 WP_186789748.1 transposase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34643.84 Da        Isoelectric Point: 6.7095

>NTDB_id=925150 VKP39_RS01360 WP_109828742.1 253895..254818(+) (amiF) [Streptococcus pyogenes strain D641]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAGKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=925150 VKP39_RS01360 WP_109828742.1 253895..254818(+) (amiF) [Streptococcus pyogenes strain D641]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGCTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAGTCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAGCCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTCTCAAACGGATGCAAGCCGGAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATCATCCAGACCAGCATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.026

99.674

0.818
  amiF Streptococcus thermophilus LMD-9

81.699

99.674

0.814
  amiF Streptococcus salivarius strain HSISS4

81.699

99.674

0.814