Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AB5J48_RS23665 Genome accession   NZ_CP163433
Coordinates   5257901..5260102 (+) Length   733 a.a.
NCBI ID   WP_031065325.1    Uniprot ID   -
Organism   Streptomyces sp. R17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5252901..5265102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J48_RS23640 (AB5J48_23640) - 5253098..5253331 (-) 234 WP_004983019.1 Lrp/AsnC family transcriptional regulator -
  AB5J48_RS23645 (AB5J48_23645) - 5253538..5254503 (+) 966 WP_006130474.1 thiamine-phosphate kinase -
  AB5J48_RS23650 (AB5J48_23650) thiD 5254500..5255312 (+) 813 WP_369152435.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AB5J48_RS23655 (AB5J48_23655) rpmB 5255678..5255863 (-) 186 WP_003993230.1 50S ribosomal protein L28 -
  AB5J48_RS23660 (AB5J48_23660) - 5256130..5257815 (+) 1686 WP_031024177.1 DAK2 domain-containing protein -
  AB5J48_RS23665 (AB5J48_23665) recG 5257901..5260102 (+) 2202 WP_031065325.1 ATP-dependent DNA helicase RecG Machinery gene
  AB5J48_RS23670 (AB5J48_23670) rsmD 5260166..5260753 (+) 588 WP_006130470.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB5J48_RS23675 (AB5J48_23675) coaD 5260780..5261259 (+) 480 WP_006130469.1 pantetheine-phosphate adenylyltransferase -
  AB5J48_RS23680 (AB5J48_23680) - 5261372..5262487 (+) 1116 WP_006130468.1 ATP synthase F0 subunit B -
  AB5J48_RS23685 (AB5J48_23685) - 5262619..5263263 (+) 645 WP_006130467.1 DUF177 domain-containing protein -
  AB5J48_RS23690 (AB5J48_23690) rpmF 5263266..5263439 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  AB5J48_RS23695 (AB5J48_23695) rnc 5263459..5264277 (+) 819 WP_189408570.1 ribonuclease III -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 79563.15 Da        Isoelectric Point: 6.3897

>NTDB_id=925119 AB5J48_RS23665 WP_031065325.1 5257901..5260102(+) (recG) [Streptomyces sp. R17]
MDAVPALDEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSRA
PRGKGQRLEVTITDGSGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRADSEEAVESWAGALI
PLYPATAKLESWKIGKAIQTVLPSAQEAADPLPETLREGRGLLPLPEALLKIHRPHTKADIDQARARLKWDEAFVLQVAL
ARRRHADAQLPAVPRRPRPDGILAAFDDRLPFTLTEGQRKVSEEIFADLATEHPMHRLLQGEVGSGKTLVALRAMLAVVD
AGGQAAMLAPTEVLAQQHHRSVTEMMGELAEGGMLGGSENATKVVLLTGSMGAAARRQALLDLATGEAGVVIGTHALIED
KVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAAD
KPHFLARAWERVREEAGKGHQAYVVCPRIGDEEDGAKAKKKSPEDEAEKRPPLAVLDIAEQLARGPLAGLRVEVLHGRMQ
PDDKDAVMRRFAAGEADVLVATTVIEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASAARQ
RLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGTRSSLRMLAVIDDEEVIAEAREEATRIVAADPDLERLPALRTALDA
LLDEEREQYLEKG

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=925119 AB5J48_RS23665 WP_031065325.1 5257901..5260102(+) (recG) [Streptomyces sp. R17]
ATGGATGCCGTGCCCGCACTGGACGAACCACTGAAGAAAGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGACCTGCTGCACCACTACCCCCGCCGGTACGAGGAGCGCGGCCAGCTCACCCACCTCGCCG
ACCTGCCGATGGACGAGCACGTCACCGTGGTCGCGCAGGTCGCCGACGCCCGGCTGCACACCTTCGCCTCCAGCCGCGCC
CCGCGCGGCAAGGGCCAGCGCCTGGAGGTGACGATCACCGACGGCAGCGGCCGGCTCCAGCTGGTGTTCTTCGGCGCCGG
TGTCCACAAGCCGCACAAGGAACTCCTGCCGGGCACCCGCGCGATGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCCGTC
TCCAACTCGCGCACCCGGCCTACGAGTTGCTTCGCGCCGACTCCGAGGAGGCCGTCGAGAGCTGGGCCGGCGCCCTGATC
CCGCTCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGGCAAGGCGATCCAGACGGTCCTGCCGAGCGCCCAGGA
GGCCGCCGACCCGCTCCCGGAGACCCTGCGCGAGGGCCGCGGCCTGCTCCCGCTGCCCGAGGCCCTGCTGAAGATCCACC
GCCCGCACACCAAGGCGGACATCGACCAGGCCCGCGCCCGCCTCAAGTGGGACGAGGCGTTCGTCCTCCAGGTCGCCCTC
GCCCGCCGCCGGCACGCCGACGCGCAGCTCCCGGCCGTGCCCCGCCGCCCGCGGCCCGACGGCATCCTCGCCGCCTTCGA
CGACCGCCTCCCCTTCACCCTCACGGAGGGCCAGCGGAAGGTCTCCGAGGAGATCTTCGCCGACCTCGCCACCGAGCACC
CCATGCACCGCCTGCTTCAGGGCGAGGTCGGTTCCGGCAAGACCCTGGTCGCCCTGCGCGCGATGCTCGCCGTCGTCGAC
GCGGGCGGACAGGCCGCGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGCTCGGTCACCGAGATGATGGG
CGAGCTGGCCGAGGGAGGGATGCTCGGCGGCTCGGAGAACGCCACCAAGGTGGTCCTGCTCACCGGCTCCATGGGCGCCG
CCGCCCGCCGCCAGGCCCTGCTCGACCTGGCCACCGGCGAGGCCGGCGTCGTCATCGGCACGCACGCGCTGATCGAGGAC
AAGGTGCAGTTCCACGACCTCGGCCTGGTGGTCGTGGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGCGACGCCCTGCG
CGGCAAGGGCAAACAGCCGCCGCACCTGCTGGTCATGACGGCCACGCCCATCCCGCGCACGGTCGCCATGACCGTCTTCG
GCGACCTGGAGACCTCCGTCCTGGACCAGCTCCCGGCCGGCCGCTCGCCCATCGCCAGCCATGTCGTCCCCGCCGCCGAC
AAGCCGCACTTCCTCGCCCGCGCCTGGGAGCGGGTGCGCGAGGAGGCCGGCAAGGGCCACCAGGCGTACGTGGTCTGCCC
GCGCATCGGCGACGAGGAGGACGGCGCCAAGGCGAAGAAGAAGTCCCCGGAGGACGAGGCGGAGAAGCGGCCCCCGCTCG
CCGTGCTGGACATCGCCGAGCAGCTCGCGCGGGGGCCGCTGGCCGGACTGCGCGTGGAGGTGCTGCACGGCAGGATGCAG
CCCGACGACAAGGACGCCGTGATGCGCAGGTTCGCCGCCGGCGAGGCGGACGTCCTGGTGGCCACCACCGTCATCGAGGT
CGGCGTCAACGTCCCCAATGCCACCGTGATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCCAGCTGCACCAGCTCC
GCGGCCGTGTCGGCCGTGGCTCGGCCCCCGGACTGTGCCTGCTGGTCACGGAGATGCCCGAGGCGAGCGCCGCCCGCCAG
CGGCTGAACGCGGTCGCCTCCACCCTCGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCGCCGCGAGGGCGACGT
CCTGGGCCAGGCCCAGTCCGGCACCCGGTCCAGCCTGCGCATGCTCGCCGTCATCGACGACGAGGAGGTCATCGCCGAGG
CCCGCGAGGAGGCCACCCGGATCGTGGCCGCCGACCCGGACCTGGAGCGCCTGCCCGCCCTGCGCACCGCGCTGGACGCC
CTGCTGGACGAGGAGCGTGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(542-620)

DEAD/DEAH box helicase (DEAD)

(296-448)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(648-709)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.362

94.952

0.364