Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   VKP55_RS08500 Genome accession   NZ_CP142351
Coordinates   1704831..1705544 (+) Length   237 a.a.
NCBI ID   WP_014635777.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1366     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699831..1710544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP55_RS08490 (VKP55_08490) treC 1700900..1702528 (-) 1629 WP_003060139.1 alpha,alpha-phosphotrehalase -
  VKP55_RS08495 (VKP55_08495) treP 1702596..1704620 (-) 2025 WP_136038074.1 PTS system trehalose-specific EIIBC component -
  VKP55_RS08500 (VKP55_08500) treR 1704831..1705544 (+) 714 WP_014635777.1 trehalose operon repressor Regulator
  VKP55_RS08505 (VKP55_08505) - 1705823..1706154 (-) 332 Protein_1621 winged helix-turn-helix transcriptional regulator -
  VKP55_RS08510 (VKP55_08510) - 1706340..1707197 (+) 858 Protein_1622 VOC family protein -
  VKP55_RS08515 (VKP55_08515) yaaA 1707239..1707970 (+) 732 WP_011055084.1 peroxide stress protein YaaA -
  VKP55_RS08520 (VKP55_08520) nrdG 1708144..1708758 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  VKP55_RS08525 (VKP55_08525) - 1708773..1709267 (-) 495 WP_011055085.1 GNAT family N-acetyltransferase -
  VKP55_RS08530 (VKP55_08530) - 1709276..1710211 (-) 936 WP_326674183.1 Gfo/Idh/MocA family oxidoreductase -
  VKP55_RS08535 (VKP55_08535) - 1710240..1710386 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27548.73 Da        Isoelectric Point: 9.7515

>NTDB_id=925071 VKP55_RS08500 WP_014635777.1 1704831..1705544(+) (treR) [Streptococcus pyogenes strain SS1366]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTRGIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=925071 VKP55_RS08500 WP_014635777.1 1704831..1705544(+) (treR) [Streptococcus pyogenes strain SS1366]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTAGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGGAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

67.949

98.734

0.671