Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J48_RS02565 Genome accession   NZ_CP163433
Coordinates   687426..688079 (+) Length   217 a.a.
NCBI ID   WP_006133761.1    Uniprot ID   M3CTL8
Organism   Streptomyces sp. R17     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 682426..693079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J48_RS02535 (AB5J48_02535) - 682743..683231 (-) 489 WP_031016783.1 DUF6328 family protein -
  AB5J48_RS02540 (AB5J48_02540) - 683371..683712 (+) 342 WP_189480701.1 hypothetical protein -
  AB5J48_RS02545 (AB5J48_02545) - 683777..684760 (-) 984 WP_031016780.1 aldo/keto reductase -
  AB5J48_RS02550 (AB5J48_02550) - 684840..685547 (-) 708 WP_031016766.1 ribonuclease H -
  AB5J48_RS02555 (AB5J48_02555) - 685578..686372 (-) 795 WP_242783283.1 VOC family protein -
  AB5J48_RS02560 (AB5J48_02560) - 686689..687174 (-) 486 WP_189480697.1 VOC family protein -
  AB5J48_RS02565 (AB5J48_02565) clpP 687426..688079 (+) 654 WP_006133761.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J48_RS02570 (AB5J48_02570) clpP 688079..688681 (+) 603 WP_189480696.1 ClpP family protease Regulator
  AB5J48_RS02575 (AB5J48_02575) - 688717..689148 (-) 432 WP_189407062.1 RodZ family helix-turn-helix domain-containing protein -
  AB5J48_RS02580 (AB5J48_02580) - 689425..690312 (+) 888 WP_006133764.1 SigB/SigF/SigG family RNA polymerase sigma factor -
  AB5J48_RS02585 (AB5J48_02585) - 690397..690852 (-) 456 WP_086682753.1 ATP-binding protein -
  AB5J48_RS02590 (AB5J48_02590) - 690995..691552 (+) 558 WP_031016756.1 PRC-barrel domain-containing protein -
  AB5J48_RS02595 (AB5J48_02595) - 691549..691953 (+) 405 WP_006133770.1 PRC-barrel domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23574.67 Da        Isoelectric Point: 5.0553

>NTDB_id=925065 AB5J48_RS02565 WP_006133761.1 687426..688079(+) (clpP) [Streptomyces sp. R17]
MSPFTAGPWPAPPRAEDGDTPPTRFDDHLAAQLLAQRIVLLGTQVDEVSANRVCAQLLLLSAEDPRTDISLYVNSPGGSV
HAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLCVGAPGKRYALPNARIMMHQPSGGIGGTTADIEIQAENLEYTKRTIE
RITAEHTGQTPETISRDGDRDRWFTAEQARAYGMVDRVLDSLDDVRPAATRPRMGLR

Nucleotide


Download         Length: 654 bp        

>NTDB_id=925065 AB5J48_RS02565 WP_006133761.1 687426..688079(+) (clpP) [Streptomyces sp. R17]
ATGTCACCCTTCACCGCCGGCCCGTGGCCGGCCCCGCCCCGGGCGGAGGACGGCGACACCCCGCCGACCCGCTTCGACGA
CCACCTCGCCGCCCAGCTGCTCGCCCAGCGGATCGTGCTGCTCGGCACGCAGGTCGACGAGGTGTCCGCGAACCGGGTGT
GCGCACAGCTGCTGCTCCTGTCCGCCGAGGACCCGCGCACCGACATCAGCCTGTACGTCAACAGCCCCGGCGGCTCGGTG
CACGCCGGGCTGGCCATCTACGACACGATGCGGCTGATCCCCAACGACGTCTCCACCCTGGCCATGGGGTTCGCGGCCAG
CATGGGACAGTTCCTGCTCTGCGTCGGCGCGCCCGGCAAGCGCTACGCCCTGCCGAACGCGCGGATCATGATGCACCAGC
CGTCGGGCGGCATCGGCGGGACGACCGCCGACATCGAGATCCAGGCGGAGAACCTGGAGTACACCAAGCGGACCATCGAG
CGGATCACCGCCGAGCACACCGGCCAGACCCCGGAGACCATCTCGCGGGACGGCGACCGGGACCGCTGGTTCACGGCCGA
ACAGGCACGTGCGTACGGGATGGTCGACCGGGTGCTGGACTCGCTGGACGACGTCCGCCCGGCGGCCACCCGACCGAGGA
TGGGGCTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M3CTL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.438

82.028

0.406
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.977

79.724

0.382
  clpP Streptococcus pneumoniae Rx1

47.977

79.724

0.382
  clpP Streptococcus pneumoniae D39

47.977

79.724

0.382
  clpP Streptococcus pneumoniae TIGR4

47.977

79.724

0.382
  clpP Streptococcus pneumoniae R6

47.977

79.724

0.382
  clpP Streptococcus pyogenes JRS4

46.857

80.645

0.378
  clpP Streptococcus pyogenes MGAS315

46.857

80.645

0.378
  clpP Lactococcus lactis subsp. cremoris KW2

45.143

80.645

0.364