Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J55_RS13235 Genome accession   NZ_CP163432
Coordinates   2908875..2910803 (+) Length   642 a.a.
NCBI ID   WP_369270867.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2903875..2915803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS13220 (AB5J55_13220) - 2904997..2905305 (+) 309 WP_362382565.1 YtxH domain-containing protein -
  AB5J55_RS13225 (AB5J55_13225) - 2905507..2906961 (+) 1455 WP_369270864.1 FGGY-family carbohydrate kinase -
  AB5J55_RS13230 (AB5J55_13230) rcrP 2907142..2908875 (+) 1734 WP_369270865.1 ABC transporter ATP-binding protein Regulator
  AB5J55_RS13235 (AB5J55_13235) rcrQ 2908875..2910803 (+) 1929 WP_369270867.1 ABC transporter ATP-binding protein Regulator
  AB5J55_RS13240 (AB5J55_13240) - 2910960..2912270 (-) 1311 WP_369270868.1 RNA polymerase sigma factor -
  AB5J55_RS13245 (AB5J55_13245) dnaG 2912385..2914286 (-) 1902 WP_369270869.1 DNA primase -
  AB5J55_RS13250 (AB5J55_13250) - 2914416..2915681 (-) 1266 WP_369270870.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69627.99 Da        Isoelectric Point: 5.3084

>NTDB_id=925005 AB5J55_RS13235 WP_369270867.1 2908875..2910803(+) (rcrQ) [Streptomyces sp. R11]
MAGPMGRMMAGGGPDQRSLDFKVSGRRLVAQFKPERVTIYALLVCVVVSVGLSVAGPKILGAATDLVFAGIVGRQFESGM
SKEQVLAAMRERGDNQIADMLRSTDFTPGQGIDFGAVGNVLLFALIVFLVAGVLMAVATRLVNRAVNRTMYRMREDVQTK
LSRLPLSYFDKSRRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHTLVKVFGRQEESAQQFAEQNEALYEAGFKAQFNSGVMQPLMLFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQDADPVPGVRPEELRGRVALE
GVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSSGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGSIVEQGAHGELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=925005 AB5J55_RS13235 WP_369270867.1 2908875..2910803(+) (rcrQ) [Streptomyces sp. R11]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGCGGCGGCCCCGATCAGCGCTCGCTGGACTTCAAGGTCTCGGGCAGGCG
GCTGGTCGCGCAGTTCAAGCCCGAGCGGGTCACCATCTACGCGCTGCTGGTCTGCGTGGTCGTGAGCGTGGGCCTGTCGG
TCGCCGGGCCGAAGATCCTCGGTGCCGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGCAGTTCGAGTCCGGGATG
AGCAAGGAGCAGGTCCTCGCGGCCATGCGGGAGCGCGGCGACAACCAGATCGCCGACATGCTGCGCAGCACCGACTTCAC
GCCGGGCCAGGGCATCGACTTCGGCGCGGTGGGGAACGTACTGCTCTTCGCGCTCATCGTGTTCCTCGTCGCCGGTGTGC
TGATGGCGGTGGCGACTCGGCTGGTGAACCGGGCCGTGAACCGGACGATGTACCGGATGCGTGAGGACGTCCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGAGCCGGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGGCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCCGTGCTCACCATCATCGGTGTGCTGGCGATGATGT
TCTGGGTGTCATGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTCGCCACGCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGCTGTTCGTGTCGAACATCAACTACGTCCTGGTCGCG
GTGGTCGGCGGTCTGCGGGTGGCGTCCGGCTCGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCGTCGGCGGAGCGGATCTTCGAGC
TGCTGGACGCCGAGGAGCAGGACGCGGATCCCGTGCCGGGTGTGCGGCCCGAGGAGTTGCGGGGGCGGGTGGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGTCCCACGGGGGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGCTTCTACGACGTGTCGTCCGGGCGCA
TCACCCTCGACGGGGTCGACATCGCCCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGGATGGTGCTGCAGGACACG
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCTCGCGAGGTCACCCGCGGCGAGATCGAGGAGGC
GGCTCGGGCCGCCCACGCCGATCGGTTCATCCGGACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGCAGCG
GGGTCAGTGCCGGTGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTACTCGACGAG
GCGACGTCGTCTGTCGACACCCGTACGGAGGTCCTGATCCAGAAGGCCATGGCGAAGCTGGCGCATGGGCGGACGTCGTT
CGTGATCGCACATCGGTTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGGACGGCTCGATCGTGGAACAGG
GCGCGCACGGGGAGCTGTTGGCGGCCGACGGGGCGTATGCGCGGTTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.262

0.385