Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J55_RS13230 Genome accession   NZ_CP163432
Coordinates   2907142..2908875 (+) Length   577 a.a.
NCBI ID   WP_369270865.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2902142..2913875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS13200 (AB5J55_13200) - 2902645..2904384 (+) 1740 WP_369270863.1 VanW family protein -
  AB5J55_RS13220 (AB5J55_13220) - 2904997..2905305 (+) 309 WP_362382565.1 YtxH domain-containing protein -
  AB5J55_RS13225 (AB5J55_13225) - 2905507..2906961 (+) 1455 WP_369270864.1 FGGY-family carbohydrate kinase -
  AB5J55_RS13230 (AB5J55_13230) rcrP 2907142..2908875 (+) 1734 WP_369270865.1 ABC transporter ATP-binding protein Regulator
  AB5J55_RS13235 (AB5J55_13235) rcrQ 2908875..2910803 (+) 1929 WP_369270867.1 ABC transporter ATP-binding protein Regulator
  AB5J55_RS13240 (AB5J55_13240) - 2910960..2912270 (-) 1311 WP_369270868.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62780.97 Da        Isoelectric Point: 6.4067

>NTDB_id=925004 AB5J55_RS13230 WP_369270865.1 2907142..2908875(+) (rcrP) [Streptomyces sp. R11]
MLIRLLRTYLRPYRKPIAWLVLLQFLQTCATLYLPTLNADIIDKGVVTGDTGYILSYGALMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGISVTLIVRRLRPLFRAMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQHRFRRANVELTEMATGTGKLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTSSSVVP
PVAPVRELRRHGHLEIRGAGFRYPGAEEPVLKSVDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGRVLVDGEDVA
TIDPQVLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWQALEVAQAKEFVERLEGGLNAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIVVLDEGQVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=925004 AB5J55_RS13230 WP_369270865.1 2907142..2908875(+) (rcrP) [Streptomyces sp. R11]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACCGAAAACCCATCGCCTGGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAAGGGTGTCGTCACCGGCGACACCGGCTACA
TCCTGTCCTACGGCGCCTTGATGATCGGCATCTCGCTGGCGCAGGTGGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGGACCGCGGCGGCGCTCGGCCGGGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCGTTCTCGGCACGTGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTCGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGGTGGCCGTGGTGCCGGTCCTCGGCATCAGCGTGACCTTGATCGTTCGGCGGCTGCGGCCGCTGTTCCGGGCCATGCA
GGTGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGTGCCTTCGTGCGCGACG
AGTACGAGCAGCACCGCTTCCGCAGGGCCAACGTCGAGCTCACCGAGATGGCGACGGGCACCGGCAAGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCCTCGATCGCGGTGGTGTGGTTCGGCGCCCATCGCATCGACAGCGG
CGGGATGCAGATCGGTGACCTGACGGCCTTCCTCGCCTATCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACGTCGTCGAGCGTGGTGCCG
CCGGTCGCGCCGGTGCGGGAGCTGCGCCGGCACGGTCATCTGGAGATCCGGGGTGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTCCTGAAGTCCGTCGACCTGGTCGCGCTGCCGGGCGAGACGACCGCCGTCATCGGCTCGACGGGCAGCGGGA
AGTCGACCCTGCTGGGGCTCGTCCCGCGACTGTTCGACGCGACCGACGGCAGGGTGCTCGTGGACGGGGAGGACGTGGCG
ACCATCGATCCCCAGGTGCTCGCCAGGACCGTCGGGCTCGTGCCGCAGAAGCCGTATCTGTTCGCCGGGACAGTGGCGAC
CAACCTGCGCTACGGCAACCCGGACGCGACGGACGAGGAGCTGTGGCAGGCGCTCGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAGGGCGGGCTGAACGCGCCCGTCTCGCAGGGCGGGACCAATGTCTCCGGTGGTCAGCGGCAGCGGCTG
GCGATCGCGCGGACGCTGGTCCAGCGTCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCCGCCCTGCGTGCGGCGCTCGGGCGCGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTCGACGAGGGGCAGGTCGTCGGCACGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.894

97.747

0.39