Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB5J55_RS10060 Genome accession   NZ_CP163432
Coordinates   2202400..2205456 (-) Length   1018 a.a.
NCBI ID   WP_369270317.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2197400..2210456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS10045 (AB5J55_10045) - 2199041..2199997 (+) 957 WP_369270315.1 hypothetical protein -
  AB5J55_RS10050 (AB5J55_10050) - 2200178..2201317 (+) 1140 WP_369276145.1 LacI family DNA-binding transcriptional regulator -
  AB5J55_RS10055 (AB5J55_10055) - 2201314..2202225 (+) 912 WP_369270316.1 carbohydrate kinase -
  AB5J55_RS10060 (AB5J55_10060) uvrA 2202400..2205456 (-) 3057 WP_369270317.1 excinuclease ABC subunit UvrA Machinery gene
  AB5J55_RS10065 (AB5J55_10065) - 2205704..2206390 (+) 687 WP_369270318.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  AB5J55_RS10070 (AB5J55_10070) - 2206488..2207144 (+) 657 WP_369270319.1 MBL fold metallo-hydrolase -
  AB5J55_RS10075 (AB5J55_10075) - 2207534..2208418 (+) 885 WP_369270320.1 ABC transporter substrate-binding protein -
  AB5J55_RS10080 (AB5J55_10080) - 2208415..2209335 (+) 921 WP_369270321.1 amino acid ABC transporter permease -
  AB5J55_RS10085 (AB5J55_10085) - 2209356..2210084 (+) 729 WP_369276146.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1018 a.a.        Molecular weight: 111769.04 Da        Isoelectric Point: 7.7227

>NTDB_id=925000 AB5J55_RS10060 WP_369270317.1 2202400..2205456(-) (uvrA) [Streptomyces sp. R11]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPISRQSPQAIVDRVLELPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLSNPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPECTGIGTRMEVDPELIVPDEDKTLDEGAIHPWSHGHTK
DYFGRLIGALADALGFRTDIPFAGLPQRARKALLYGHKTQIEVRYRNRYGRERVYTTPFEGAVPFVKRRHSEAESDASRE
RFEGYMREVPCPTCEGTRLKPIVLAVTIMEKSIAEVSAMSISDCAEFLGELKLNARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WIVDIGPGAGEHGGKVVHSGSLKELLANAESQTGQYLAGKKSIPLPDIRRPHDPSRQLTVHGARENNLQDIDVSFPLGVF
TAVTGVSGSGKSTLVNDILYTHLARELNGARSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHIRKLFA
ETTEAKVRGYMPGRFSFNVKGGRCENCAGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLNMPIEEA
MDFFEAVPSINRHLRTLNDVGLGYVRLGQSATTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLLRVLS
GLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGAGGGLVIAEGTPEQVAAVPASHTGKFLREILDADRISDAAPVKAPRR
TAAKKTVAAGATAKKTATARTAKTVNNKATDKAAGATKKAAAAKKATPAKKATRARKA

Nucleotide


Download         Length: 3057 bp        

>NTDB_id=925000 AB5J55_RS10060 WP_369270317.1 2202400..2205456(-) (uvrA) [Streptomyces sp. R11]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAATGTCTCGCTCGACCTGCCGCGCGACTCGCT
CATCGTCTTCACGGGCCTGTCGGGGTCGGGTAAGTCCTCGCTGGCCTTCGACACGATCTTCGCCGAGGGACAGCGGCGTT
ACGTGGAGTCGCTGTCGTCCTACGCCCGGCAGTTCCTCGGTCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGTCTG
TCCCCGGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACCGAGGTCTACGA
CTATCTGCGTCTGCTCTTCGCGCGCATCGGCAAGCCGCACTGCCCCGAGTGCGGCCGCCCGATCTCGCGCCAGTCGCCGC
AGGCCATCGTCGACAGGGTCCTGGAGCTGCCGGAGGGGAGCCGCTTCCAGGTCCTGTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGATCTCTTCGCCGACCTCCAGACCAAGGGCTACTCCCGCGCGCGTGTGGACGGCGAGACGATCCAGCT
GTCCAACCCGCCCACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTCGACCGCCTCACGGTGAAGGACTCCG
CCAAGCGCCGGCTCACCGACTCCGTGGAGACCGCCCTCGGCCTGTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGCATGTACTCGGAGCACCTGTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGAGTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCCGAGCTGATCGTCCCGGACGAGGACAAGACCCTCGACGAGGGCGCCATCCACCCCTGGTCGCACGGTCACACCAAG
GACTACTTCGGCCGTCTGATCGGCGCCCTCGCGGACGCGTTGGGATTCCGGACGGACATCCCGTTCGCGGGACTGCCGCA
GCGCGCCAGGAAGGCCCTGCTGTACGGCCACAAGACGCAGATCGAGGTCCGCTACCGCAACCGTTACGGCCGCGAGCGGG
TGTACACGACGCCGTTCGAAGGGGCCGTCCCCTTCGTCAAGCGCCGGCACAGCGAGGCGGAGAGCGACGCCAGCCGTGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCACCTGTGAGGGCACGCGCCTGAAGCCGATCGTCCTCGCGGTCAC
GATCATGGAGAAGTCGATCGCCGAGGTCTCCGCGATGTCCATCAGCGACTGCGCGGAATTCCTGGGCGAGCTGAAGCTCA
ACGCCCGCGACAAGAAGATCGCCGAGCGCGTGCTGAAGGAGGTCAACGAGCGGCTGCGGTTCCTGGTCGACGTCGGCCTG
GACTACCTCTCACTCAACCGCGCGGCCGGCACGCTCTCCGGTGGCGAGGCCCAGCGCATCCGCCTGGCCACCCAGATCGG
TTCCGGACTCGTCGGCGTGCTGTACGTGCTCGACGAGCCGTCCATCGGTCTGCATCAGCGCGACAACCACCGGCTGATCG
AGACCCTGGTCCGGCTGCGCGACATGGGCAACACGCTCATCGTTGTCGAGCACGACGAGGACACCATCAAGGTCGCCGAC
TGGATCGTCGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTCGTGCACAGCGGCTCCCTGAAGGAGCTGCTCGC
CAACGCCGAGTCGCAGACCGGTCAGTACCTGGCCGGCAAGAAGTCGATCCCGCTGCCCGACATCCGACGCCCGCACGACC
CGTCCCGGCAGCTCACGGTGCACGGCGCCCGCGAGAACAACCTCCAGGACATCGACGTCTCGTTCCCCCTGGGAGTGTTC
ACCGCGGTCACCGGTGTGTCCGGCTCCGGCAAGTCCACGCTGGTCAACGACATCCTGTACACGCACCTCGCACGCGAGCT
GAACGGCGCCCGCAGCGTGCCCGGGCGGCACACGCGGGTGGACGGCGACGACCTCGTGGACAAGGTCGTGCACGTCGACC
AGTCGCCCATCGGCCGCACCCCGCGGTCGAACCCGGCGACGTACACCGGCGTGTTCGACCACATCCGCAAGCTGTTCGCC
GAGACCACCGAGGCGAAGGTCCGCGGCTACATGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CGCGGGCGACGGCACCATCAAGATCGAGATGAACTTCCTCCCGGACGTCTACGTCCCGTGCGAGGTCTGCCACGGCGCCC
GGTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTCCTGAACATGCCGATCGAGGAAGCC
ATGGACTTCTTCGAGGCCGTCCCGTCGATCAACCGTCACCTCAGGACGCTGAACGACGTCGGTCTCGGCTATGTCCGGCT
CGGACAGTCCGCGACGACGCTGTCCGGCGGTGAGGCCCAGCGGGTGAAGCTCGCCAGCGAGCTGCAGAAGCGCTCCACCG
GCCGCACGGTCTACGTTCTCGACGAGCCGACCACCGGTCTGCACTTCGAGGACATCAGCAAGCTGCTGAGGGTGCTGTCC
GGCCTGGTCGACAAGGGCAACACGGTCATCGTCATCGAGCACAACCTCGACGTGATCAAGACCGCTGACTGGGTCGTGGA
CATGGGCCCCGAAGGTGGCGCCGGCGGTGGCCTCGTCATCGCCGAGGGCACCCCCGAGCAGGTTGCCGCGGTCCCCGCCA
GCCACACCGGCAAGTTCCTGCGCGAGATCCTCGACGCCGACCGGATCAGCGACGCCGCCCCGGTGAAGGCGCCACGACGG
ACGGCCGCCAAGAAGACGGTCGCGGCAGGAGCGACGGCGAAGAAGACGGCGACGGCCAGGACCGCGAAGACGGTCAACAA
CAAGGCCACCGACAAGGCGGCCGGGGCCACGAAGAAGGCAGCTGCCGCGAAGAAGGCGACGCCCGCGAAGAAGGCGACGC
GGGCCCGCAAGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(628-864)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.037

92.829

0.529
  uvrA Streptococcus pneumoniae TIGR4

57.037

92.829

0.529
  uvrA Streptococcus pneumoniae D39

57.037

92.829

0.529