Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   AB5J58_RS31665 Genome accession   NZ_CP163431
Coordinates   6849388..6850449 (+) Length   353 a.a.
NCBI ID   WP_369190019.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6844388..6855449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS31650 (AB5J58_31650) - 6845750..6847372 (+) 1623 WP_369190016.1 ABC transporter substrate-binding protein -
  AB5J58_RS31655 (AB5J58_31655) - 6847519..6848445 (+) 927 WP_369190017.1 ABC transporter permease -
  AB5J58_RS31660 (AB5J58_31660) - 6848438..6849376 (+) 939 WP_369190018.1 ABC transporter permease -
  AB5J58_RS31665 (AB5J58_31665) amiE 6849388..6850449 (+) 1062 WP_369190019.1 ABC transporter ATP-binding protein Regulator
  AB5J58_RS31670 (AB5J58_31670) - 6850442..6851590 (+) 1149 WP_369190020.1 ABC transporter ATP-binding protein -
  AB5J58_RS31675 (AB5J58_31675) - 6851653..6852645 (-) 993 WP_369190021.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  AB5J58_RS31680 (AB5J58_31680) - 6852642..6853664 (-) 1023 WP_369190022.1 ABC transporter ATP-binding protein -
  AB5J58_RS31685 (AB5J58_31685) - 6853661..6854587 (-) 927 WP_369190023.1 ABC transporter permease -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38654.62 Da        Isoelectric Point: 6.2392

>NTDB_id=924950 AB5J58_RS31665 WP_369190019.1 6849388..6850449(+) (amiE) [Streptomyces sp. R08]
MTIIDPTDAVPAQRPGDHEKTGPLLEVRDLHVEFQTREGVVKAVNGVNYSVNSGETLAVLGESGSGKSVTAQAIMGILDM
PPARIPQGEIRFYGQDMLTMGSEERRKLRGARIAMIFQDALSSLNPVLSVGFQLGEMFRVHQGMSRKDAKARSIELMDRV
KIPAAAARVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYQMGLILITHDLGVVA
DVADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLKVPAGCAFNPRCEKAQDICR
TEFPALVPVTEADGTELPGRASACHFWKETIHG

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=924950 AB5J58_RS31665 WP_369190019.1 6849388..6850449(+) (amiE) [Streptomyces sp. R08]
GTGACCATCATCGACCCGACGGACGCCGTTCCGGCCCAGCGTCCCGGCGACCACGAGAAAACCGGCCCACTGCTCGAAGT
GCGCGATCTGCACGTCGAGTTCCAGACCCGCGAGGGTGTGGTCAAGGCCGTCAACGGCGTCAACTACTCCGTGAACTCCG
GGGAGACGCTCGCCGTGCTCGGCGAGTCCGGCTCTGGCAAGTCCGTGACCGCGCAGGCGATCATGGGCATCCTCGACATG
CCCCCGGCCCGCATTCCGCAGGGCGAGATCCGCTTCTACGGCCAGGACATGCTCACCATGGGCTCCGAGGAGCGGCGCAA
GCTGCGCGGCGCCCGGATCGCGATGATCTTCCAGGACGCGCTCTCCTCGCTCAACCCCGTGCTCAGCGTGGGGTTCCAGC
TGGGCGAGATGTTCCGCGTGCACCAGGGCATGTCCCGCAAGGACGCCAAGGCAAGGTCCATCGAGCTGATGGACCGGGTG
AAGATCCCGGCCGCCGCGGCGCGGGTGAACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGC
CATGGCGCTCGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCGACCACGGCCCTCGACGTGACGGTGCAGGCCCAGG
TCATGGACCTGCTCGCGGAGTTGCAGCGCGAGTACCAGATGGGGCTCATCCTCATCACCCACGACCTCGGCGTGGTCGCG
GACGTCGCCGACAAGATCGCGGTGATGTACGCGGGCCGCATCGTGGAGACGGCGCCGGTGCACGAGCTGTACAAGCGCCC
GGCGCACCCCTACACGCGGGGTCTGCTGGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGG
GCCTGCCGCCCAACTTGCTGAAGGTGCCCGCGGGTTGTGCCTTCAACCCGCGCTGCGAGAAGGCGCAGGACATCTGCCGT
ACGGAGTTTCCGGCACTGGTCCCGGTGACCGAGGCCGACGGAACGGAACTGCCCGGCCGCGCCAGCGCGTGCCACTTCTG
GAAGGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(255-319)

ABC transporter (ABC_tran)

(45-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

49.834

85.269

0.425
  oppD Streptococcus mutans UA159

48.22

87.535

0.422
  amiE Streptococcus thermophilus LMG 18311

49.169

85.269

0.419
  amiE Streptococcus thermophilus LMD-9

49.169

85.269

0.419