Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AB5J58_RS28705 Genome accession   NZ_CP163431
Coordinates   6191009..6192007 (+) Length   332 a.a.
NCBI ID   WP_266771374.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6186009..6197007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS28680 (AB5J58_28680) - 6186371..6187015 (+) 645 WP_266771369.1 TetR/AcrR family transcriptional regulator -
  AB5J58_RS28685 (AB5J58_28685) - 6187167..6188729 (+) 1563 WP_369189652.1 MFS transporter -
  AB5J58_RS28690 (AB5J58_28690) - 6188841..6189353 (-) 513 WP_369189653.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB5J58_RS28695 (AB5J58_28695) - 6189464..6190267 (+) 804 WP_369189654.1 dioxygenase -
  AB5J58_RS28700 (AB5J58_28700) - 6190308..6190838 (-) 531 WP_369189655.1 N-acetyltransferase family protein -
  AB5J58_RS28705 (AB5J58_28705) rpoS 6191009..6192007 (+) 999 WP_266771374.1 RNA polymerase sigma factor RpoD/SigA Regulator
  AB5J58_RS28710 (AB5J58_28710) - 6192438..6193067 (+) 630 WP_369192657.1 TetR/AcrR family transcriptional regulator -
  AB5J58_RS28715 (AB5J58_28715) - 6193075..6194046 (-) 972 WP_369189656.1 helix-turn-helix transcriptional regulator -
  AB5J58_RS28720 (AB5J58_28720) - 6194201..6195727 (+) 1527 WP_369189657.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37176.93 Da        Isoelectric Point: 5.3996

>NTDB_id=924946 AB5J58_RS28705 WP_266771374.1 6191009..6192007(+) (rpoS) [Streptomyces sp. R08]
MATRAVARRKSATGETSGVARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGEEKSQAD
ASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=924946 AB5J58_RS28705 WP_266771374.1 6191009..6192007(+) (rpoS) [Streptomyces sp. R08]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCGTGGCACGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGTACACCGCTGCTCGACGCCGCAAAGG
AAGTCGAGCTTTCGCAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTTCTCGAGGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCGCGCCGAGCTCGAAGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGGCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGGCTCCCCGTCCACCTCGTGGAGGAGCTGGGCCGGATCCGCCGAGT
GCAGCGCGAGTTCAACCGGAAGAACGGCCGGGAGCCCGAGCACGCGGAGATCGCCGCTGAGCTGGACTCGACGCCGGAGC
GCGTGACCGACGTGCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTGATCGGCCGGCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGTGAGCGGACGC
TGACGGAGGTCGGCAAGGAGCACGGGCTGACGCGGGAGCGGATCCGGCAGATCGAGAAGCACGCGTTGCTGGAGCTGAAG
AAGCTGGCGAGCCAGACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364