Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J58_RS06495 Genome accession   NZ_CP163431
Coordinates   1379924..1381657 (-) Length   577 a.a.
NCBI ID   WP_266768398.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374924..1386657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS06485 (AB5J58_06485) - 1376541..1377848 (+) 1308 WP_329555008.1 RNA polymerase sigma factor -
  AB5J58_RS06490 (AB5J58_06490) rcrQ 1377996..1379924 (-) 1929 WP_369186823.1 ABC transporter ATP-binding protein Regulator
  AB5J58_RS06495 (AB5J58_06495) rcrP 1379924..1381657 (-) 1734 WP_266768398.1 ABC transporter ATP-binding protein Regulator
  AB5J58_RS06500 (AB5J58_06500) - 1381821..1383278 (-) 1458 WP_266768397.1 FGGY-family carbohydrate kinase -
  AB5J58_RS06505 (AB5J58_06505) - 1383330..1383635 (-) 306 WP_266768396.1 YtxH domain-containing protein -
  AB5J58_RS06525 (AB5J58_06525) - 1384320..1384739 (-) 420 WP_369186824.1 SHOCT domain-containing protein -
  AB5J58_RS06530 (AB5J58_06530) - 1384754..1386154 (-) 1401 WP_369186825.1 DUF2252 domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62756.04 Da        Isoelectric Point: 6.1900

>NTDB_id=924906 AB5J58_RS06495 WP_266768398.1 1379924..1381657(-) (rcrP) [Streptomyces sp. R08]
MLIRLLRTYLRPYRKPILLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYFGA
RTASAVGRDIRGAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLTICVTLIVRRLRPLFRSMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLRTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRINSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PLAPVTQLRRHGHLEIRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVAVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=924906 AB5J58_RS06495 WP_266768398.1 1379924..1381657(-) (rcrP) [Streptomyces sp. R08]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCCTTCTTCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACTCTGAACGCGCACATCATCGACAACGGTGTGGTGAAGGGTGACACCGGCTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACCGGTGCCGTCTACTTCGGCGCG
CGCACCGCGTCCGCCGTCGGCCGGGACATCCGGGGTGCCATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGGTCCAGATGCTGACCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGATGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCGACGCTGACGATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTCGACGCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGGAAGGCCAACAGCGATCTCACCGAGATGCAGCTGAGGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCCCACCGCATCAACAGCGG
CGGGATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGACACCGAGAGCAGTGTCGTGCCG
CCGCTCGCGCCCGTCACCCAGCTGCGCCGGCACGGGCACCTGGAGATCCGCGGGGTCGGGTTCTGCTACCCGGGCGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGGA
AGTCCACCCTTCTGAGTCTGGTCCCGCGTCTGGTTGACGCGACCGACGGGGAGGTCCTCGTCGACGGGGTCGCCGTGTCC
ACCATCGACCCGGTGCTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCCACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGCCTCGACTCCCCCATCGCCCAGGGCGGCACCAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGGACACTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCCCTGCGGGCGGCGCTCTCGCAGGAAACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCCACCATCA
GGGACGCCGACCGCATCGTCGTACTCGACGAGGGCCGGGTCGTGGGGACGGGCCGCCATCACGAACTGATGGCGGACAAC
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.071

100

0.393