Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J58_RS06490 Genome accession   NZ_CP163431
Coordinates   1377996..1379924 (-) Length   642 a.a.
NCBI ID   WP_369186823.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1372996..1384924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS06475 (AB5J58_06475) - 1373242..1374519 (+) 1278 WP_369186822.1 NAD(P)/FAD-dependent oxidoreductase -
  AB5J58_RS06480 (AB5J58_06480) dnaG 1374555..1376459 (+) 1905 WP_328934060.1 DNA primase -
  AB5J58_RS06485 (AB5J58_06485) - 1376541..1377848 (+) 1308 WP_329555008.1 RNA polymerase sigma factor -
  AB5J58_RS06490 (AB5J58_06490) rcrQ 1377996..1379924 (-) 1929 WP_369186823.1 ABC transporter ATP-binding protein Regulator
  AB5J58_RS06495 (AB5J58_06495) rcrP 1379924..1381657 (-) 1734 WP_266768398.1 ABC transporter ATP-binding protein Regulator
  AB5J58_RS06500 (AB5J58_06500) - 1381821..1383278 (-) 1458 WP_266768397.1 FGGY-family carbohydrate kinase -
  AB5J58_RS06505 (AB5J58_06505) - 1383330..1383635 (-) 306 WP_266768396.1 YtxH domain-containing protein -
  AB5J58_RS06525 (AB5J58_06525) - 1384320..1384739 (-) 420 WP_369186824.1 SHOCT domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69562.25 Da        Isoelectric Point: 6.5152

>NTDB_id=924905 AB5J58_RS06490 WP_369186823.1 1377996..1379924(-) (rcrQ) [Streptomyces sp. R08]
MAGPMGRMMAGTGPDARSMDFKVSGKRLIGQFRPERLTIGILLMCVVVSVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLALCTFLVAGLLMAVATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAELFAEQNNALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAPDPMPSERPAELRGLVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=924905 AB5J58_RS06490 WP_369186823.1 1377996..1379924(-) (rcrQ) [Streptomyces sp. R08]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGTGTCCGGCAAGCG
GCTGATCGGCCAGTTCAGGCCGGAGCGGCTGACCATCGGCATCCTGCTGATGTGCGTCGTGGTGAGCGTCGGGCTGAACG
TGGTCGGGCCGAAGATCCTCGGCAACGCCACCGACCTGGTGTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGCACG
ACCAAGGCGCAGGCCCTCCAGGCGATGCGCGACCGCGGCCAGGGTTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
GCCGGGCAAGGGCATCGACTTCACCTCGGTGGGTCATGTGCTGCTGCTCGCGCTGTGCACGTTCCTGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACCATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGGCTCCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTGTCGCGCGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTCGCCCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCCTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGCCGGCAGGACGAGTCGGCGGAGCTGTTCGCCGAGCAGAACAACGCGCTGTACGAGGCGG
GCTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTCTCGAACCTCAACTACGTGCTGGTGGCC
GTGGTCGGCGGCCTGCGCGTGGCCTCGGGCTCCCTCTCCATCGGCGATGTGCAGGCGTTCGTCCAGTACTCACGCCAGTT
CTCCATGCCGCTGACCCAGGTCGCGTCGATGGCGAACCTGGTCCAGTCCGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGGCCCCCGACCCGATGCCGAGCGAACGCCCCGCGGAGCTCCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCCCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTGGGCCCGACGGGAGCCGGCAAGACGACCCTGGTGAACCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTGGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCGGACAACATCGCGTACGGGGCCTCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGAGGGCTACGACACGGTCATCGACGACGAGGGCACGG
GCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTCCTCGACGAG
GCGACGTCCTCCGTGGACACCCGCACGGAGGTGTTGATCCAGAAGGCGATGGCCAAGCTCGCGCACGGCCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCACGCGGACCTGTTGGCGGCGGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCCCAGGCGGTCGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.806

96.262

0.383