Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   AB4670_RS01620 Genome accession   NZ_CP163382
Coordinates   349398..349961 (+) Length   187 a.a.
NCBI ID   WP_031961383.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Y03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344398..354961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4670_RS01610 (AB4670_01610) - 344615..345304 (+) 690 WP_079281925.1 pilus assembly protein PilX -
  AB4670_RS01615 (AB4670_01615) - 345330..349388 (+) 4059 WP_272282483.1 PilC/PilY family type IV pilus protein -
  AB4670_RS01620 (AB4670_01620) comE 349398..349961 (+) 564 WP_031961383.1 type IV pilin protein Machinery gene
  AB4670_RS01625 (AB4670_01625) comF 349961..350383 (+) 423 WP_272282481.1 type IV pilin protein Machinery gene
  AB4670_RS01630 (AB4670_01630) rpsP 350531..350782 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  AB4670_RS01635 (AB4670_01635) rimM 350802..351350 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  AB4670_RS01640 (AB4670_01640) trmD 351395..352135 (+) 741 WP_373659040.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AB4670_RS01645 (AB4670_01645) rplS 352344..352712 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  AB4670_RS01650 (AB4670_01650) - 352765..353706 (-) 942 WP_104131029.1 triacylglycerol lipase -
  AB4670_RS01655 (AB4670_01655) - 353821..354855 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20604.52 Da        Isoelectric Point: 8.3938

>NTDB_id=924754 AB4670_RS01620 WP_031961383.1 349398..349961(+) (comE) [Acinetobacter baumannii strain Y03]
MLKQRAFTLLELMVTVVIIAILAAIAYPSYTRYIEKKDLAVAKQEAQRIATELERFKAKNFSYKGFDATYLYNAGTVTPY
NATTGTLLLPLDATSTTAKYTLTLLDGTQHLPLSILKGSDGNETADSAKVQGLNWVIIVERAKNNSGEPKQANNYDLLIN
SDGFRCMTKVKNVVSGYTDCGSNSETW

Nucleotide


Download         Length: 564 bp        

>NTDB_id=924754 AB4670_RS01620 WP_031961383.1 349398..349961(+) (comE) [Acinetobacter baumannii strain Y03]
ATGTTGAAACAACGAGCTTTTACCCTGCTTGAGTTGATGGTCACTGTGGTGATTATTGCGATTTTAGCTGCTATCGCGTA
TCCAAGTTATACGCGATACATTGAAAAAAAAGATCTAGCCGTAGCAAAACAAGAGGCTCAGCGTATTGCTACGGAGTTAG
AGCGTTTTAAAGCTAAAAACTTTAGCTATAAAGGTTTTGATGCGACTTACCTTTATAATGCTGGAACGGTTACTCCTTAT
AATGCAACCACTGGTACTTTATTGTTGCCACTAGATGCTACGTCAACAACTGCCAAGTACACATTGACTCTATTAGATGG
CACTCAACATTTACCTTTATCTATTTTAAAGGGCTCTGATGGTAACGAGACAGCAGACTCTGCGAAAGTCCAAGGTTTAA
ACTGGGTTATTATTGTTGAAAGGGCTAAGAATAATAGTGGTGAACCTAAGCAAGCTAATAACTATGATTTACTTATAAAC
AGCGATGGTTTTCGTTGTATGACAAAAGTTAAAAATGTAGTCAGTGGATATACTGACTGTGGTAGCAATAGTGAGACATG
GTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.85

100

0.439