Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   AB4670_RS00935 Genome accession   NZ_CP163382
Coordinates   211273..214104 (-) Length   943 a.a.
NCBI ID   WP_021510198.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Y03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 206273..219104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4670_RS00925 (AB4670_00925) - 207696..209402 (+) 1707 WP_031961481.1 GGDEF domain-containing protein -
  AB4670_RS00930 (AB4670_00930) - 209487..211193 (+) 1707 WP_373658875.1 KAP family P-loop domain protein -
  AB4670_RS00935 (AB4670_00935) uvrA 211273..214104 (-) 2832 WP_021510198.1 excinuclease ABC subunit UvrA Machinery gene
  AB4670_RS00940 (AB4670_00940) - 214401..215003 (+) 603 WP_133238275.1 TetR/AcrR family transcriptional regulator -
  AB4670_RS00945 (AB4670_00945) - 215007..215984 (+) 978 WP_001256576.1 zinc-binding dehydrogenase -
  AB4670_RS00950 (AB4670_00950) - 216050..216403 (+) 354 WP_373658880.1 DUF1304 domain-containing protein -
  AB4670_RS00955 (AB4670_00955) - 216456..216797 (+) 342 WP_000263329.1 GlpM family protein -
  AB4670_RS00960 (AB4670_00960) tenA 216847..217521 (-) 675 WP_000899418.1 thiaminase II -
  AB4670_RS00965 (AB4670_00965) - 217784..218866 (+) 1083 WP_000680213.1 DUF475 domain-containing protein -

Sequence


Protein


Download         Length: 943 a.a.        Molecular weight: 104258.56 Da        Isoelectric Point: 6.5117

>NTDB_id=924745 AB4670_RS00935 WP_021510198.1 211273..214104(-) (uvrA) [Acinetobacter baumannii strain Y03]
MSQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPEVDSIEG
LSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLPMVAQTVSEMVDAVKNLEEGTALMLLAPVVRER
KGEYSNLFEQLQGQGFVRARVDGEIIDIDTPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALRLGGDIAVLSWMN
GEHPDRVFSAKHSCPECDRAVAELEPRLFSFNNPFGACPVCDGLGTRSHFSPEKLIPNPELAISEGAIRGWDRQRPYYYS
MLQKVADHFGFQLDTPWNQLDKDTQKKFLQGTGKEKIDLSYIDERGRKHTRVQPFEGILPHLERRYRETESNYVRDDLAQ
YLSNAACDACGGSRLNEISRHVRVKDKTIADITRMSIGDAESYYQGINLEGAKGEIADKIFKEIRERLHFLVSVGLNYLS
LARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADHIID
IGPGAGVHGGVVIAEGTYDELAKHADSLTGQYLSGKLKIEVPKQRTQPPKPEEKIKLSGAAGHNLKNVDLTIPLGIMTCV
TGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSIDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQT
PEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAE
FFSAIPVIHRRLETLTQVGLGYIRLGQAATTLSGGEAQRVKLARELAKRDTGKTLYILDEPTTGLHFHDIAKLLDILHEL
RNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGMIIAEGTPEQVAEVEISHTGRFLKPMLK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=924745 AB4670_RS00935 WP_021510198.1 211273..214104(-) (uvrA) [Acinetobacter baumannii strain Y03]
ATGAGCCAAAGTCATATCCGTATTCGAGGCGCACGCACCCATAACTTAAAAAATGTGTCACTCGATATTCCACGCGACAA
ATTTGTGGTAATTACGGGGCTATCAGGTTCAGGAAAATCTTCTCTTGCCTTTGATACCTTGTATGCCGAAGGACAGCGCC
GTTATGTCGAATCACTTTCGGCATATGCCCGTCAGTTTTTATCGCAAATGGAAAAACCTGAAGTCGACTCGATTGAAGGT
TTATCACCAGCCATTGCGATTGAGCAAAAGTCTACTAGCCATAACCCACGTTCAACGGTTGGTACGATTACCGAAATTTA
CGACTATTTGCGTCTGCTTTATGCACGTGTCGGTACGCCTTATTGCCCTGAACACGACTTACCTATGGTTGCGCAAACTG
TTTCTGAAATGGTCGATGCGGTAAAGAACCTTGAGGAAGGCACTGCACTCATGTTGCTTGCCCCTGTTGTTCGTGAACGT
AAAGGTGAATACAGCAACTTGTTCGAACAACTACAAGGTCAAGGTTTTGTTCGTGCCCGTGTTGATGGTGAAATCATTGA
TATTGATACACCACCGGAACTCGACAAAAAGAAAAAACATACCATTGAGGTAGTTGTTGACCGCTTTAAAGTACGTGATG
ACTTAGGCAACCGTATTGCTGAATCATTTGAAACTGCACTGCGTTTAGGTGGTGATATTGCAGTTTTATCGTGGATGAAT
GGCGAACATCCAGATCGCGTTTTTTCTGCAAAACACTCATGCCCTGAATGTGATCGCGCAGTCGCAGAGCTTGAGCCACG
TTTATTTTCATTTAACAACCCGTTTGGTGCGTGCCCTGTCTGTGATGGCTTAGGTACACGTAGCCATTTTAGCCCTGAAA
AACTCATTCCTAACCCTGAGCTTGCAATTAGTGAAGGTGCTATTCGTGGTTGGGATCGTCAACGTCCTTATTACTATTCA
ATGCTGCAAAAAGTTGCCGACCATTTCGGTTTTCAACTTGATACACCTTGGAATCAGTTAGATAAAGACACGCAAAAGAA
ATTCTTACAAGGTACTGGCAAAGAAAAAATCGATTTAAGTTATATCGATGAACGTGGCCGTAAACATACACGCGTGCAAC
CTTTTGAAGGAATTTTGCCACACCTTGAACGTCGCTATCGTGAAACTGAAAGTAACTATGTACGTGATGATTTAGCACAA
TATTTGTCTAATGCAGCTTGTGATGCATGTGGCGGTTCACGTCTCAATGAAATTTCACGTCATGTTCGTGTGAAAGACAA
AACCATTGCTGACATTACCCGCATGTCGATTGGAGATGCCGAAAGTTACTATCAAGGTATAAACCTTGAAGGTGCCAAAG
GTGAAATTGCAGATAAAATCTTTAAAGAGATTCGTGAGCGTTTACATTTCTTGGTGAGTGTTGGCCTGAACTATTTAAGT
CTGGCTCGTTCTGCCGAAACACTATCGGGTGGTGAAGCCCAGCGTATCCGTCTAGCTTCGCAAATTGGTGCAGGTTTGAT
GGGTGTCATGTACGTCCTTGATGAACCATCAATTGGTCTCCATCAACGTGATAATGACCGTTTATTACAAACGCTAATTC
GCTTACGTGATTTGGGCAATACGGTATTAGTCGTTGAACATGATGAAGATGCAATCCGTGCAGCTGACCATATTATTGAT
ATCGGCCCTGGTGCTGGCGTGCATGGTGGGGTTGTCATTGCTGAAGGTACGTATGATGAGCTGGCTAAACATGCCGACTC
ACTCACAGGCCAATATCTTTCAGGCAAACTCAAAATTGAAGTGCCAAAACAGCGAACTCAACCACCTAAACCTGAAGAAA
AAATTAAACTTTCAGGTGCAGCCGGTCATAACTTAAAAAATGTCGATTTAACCATCCCACTTGGCATTATGACTTGTGTC
ACGGGTGTTTCAGGTTCAGGTAAATCAACACTGATTAACCGTACGTTACTTCCACTGGCTGCAACACAGCTCAACGGTGC
AACGACCTTAACAGCCGAAAAATTTGACTCGATTGATGGTCTTCAACATTTAGATAAAGTCGTTGATATTGACCAAAGCC
CAATTGGCCGTACACCGCGCTCTAATCCAGCGACTTATACGGGTCTATTTACGCCAATTCGTGAATTATTTGCTCAAACA
CCAGAAGCGAAAGCGCGTGGTTATAGTGCGGGTCGCTTCTCGTTTAACGTAAAAGGCGGACGCTGCGAAGCGTGTGAAGG
CGACGGTATGATTAAAGTCGCAATGCACTTCTTACCAGACATGTATGTACCTTGCGATGCTTGTCATGGTAAGCGCTATA
ACCGTGAAACACTTGAAGTCGGTTATAAAGGCAAAAACATTTCTGATGTTTTAGAAATGACGGTTGAAGATGCTGCTGAG
TTCTTTAGTGCTATTCCTGTTATTCACCGCCGCTTAGAAACCTTAACTCAGGTTGGCTTAGGCTATATTCGTTTAGGTCA
GGCTGCTACTACTTTATCGGGTGGTGAAGCACAGCGTGTCAAACTGGCTCGTGAGTTAGCGAAACGTGATACGGGTAAAA
CGCTTTATATCTTGGATGAACCAACAACAGGTTTGCATTTCCATGATATTGCCAAGTTACTCGATATTTTGCATGAGCTA
CGCAACAAGGGTAATACCATTGTGGTGATTGAACATAACCTTGATGTCATTAAAACAGCAGACTGGGTTGTCGACTTAGG
TCCAGAAGGTGGTTCGGGCGGTGGTATGATTATTGCCGAAGGTACACCTGAACAAGTAGCCGAGGTCGAGATTTCCCATA
CTGGTCGCTTCTTGAAACCGATGTTGAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.25

100

0.563

  uvrA Streptococcus pneumoniae TIGR4

56.25

100

0.563

  uvrA Streptococcus pneumoniae D39

56.25

100

0.563