Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB4O66_RS23885 Genome accession   NZ_CP163132
Coordinates   4925996..4926988 (-) Length   330 a.a.
NCBI ID   WP_000224500.1    Uniprot ID   -
Organism   Escherichia coli strain W4 isolate China:Kunming     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4920996..4931988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O66_RS23875 (AB4O66_23875) yieP 4923888..4924580 (+) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -
  AB4O66_RS23880 (AB4O66_23880) mdtD 4924603..4926030 (+) 1428 WP_061092921.1 multidrug transporter subunit MdtD -
  AB4O66_RS23885 (AB4O66_23885) cytR 4925996..4926988 (-) 993 WP_000224500.1 ribose operon transcriptional repressor RbsR Regulator
  AB4O66_RS23890 (AB4O66_23890) rbsK 4926992..4927921 (-) 930 WP_001361791.1 ribokinase -
  AB4O66_RS23895 (AB4O66_23895) rbsB 4928047..4928937 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AB4O66_RS23900 (AB4O66_23900) rbsC 4928962..4929927 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  AB4O66_RS23905 (AB4O66_23905) rbsA 4929932..4931437 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  AB4O66_RS23910 (AB4O66_23910) rbsD 4931445..4931864 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36626.88 Da        Isoelectric Point: 5.2141

>NTDB_id=924741 AB4O66_RS23885 WP_000224500.1 4925996..4926988(-) (cytR) [Escherichia coli strain W4 isolate China:Kunming]
MATMKDVARQAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=924741 AB4O66_RS23885 WP_000224500.1 4925996..4926988(-) (cytR) [Escherichia coli strain W4 isolate China:Kunming]
TTGGCTACAATGAAAGATGTTGCCCGCCAGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATCGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAACGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361