Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JE76HU_RS16485 Genome accession   NZ_AP028094
Coordinates   3228759..3229274 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain JNE132847     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223759..3234274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JE76HU_RS16460 (O76HUS_31360) ygaZ 3224158..3224895 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  JE76HU_RS16465 (O76HUS_31370) ygaH 3224885..3225220 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  JE76HU_RS16470 (O76HUS_31380) emrR 3225311..3225841 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  JE76HU_RS16475 (O76HUS_31390) emrA 3225968..3227140 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  JE76HU_RS16480 (O76HUS_31400) emrB 3227157..3228695 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  JE76HU_RS16485 (O76HUS_31410) luxS 3228759..3229274 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  JE76HU_RS16490 (O76HUS_31420) gshA 3229424..3230980 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  JE76HU_RS16495 (O76HUS_31430) yqaA 3231053..3231481 (-) 429 WP_001287454.1 YqaA family protein -
  JE76HU_RS16500 (O76HUS_31440) yqaB 3231478..3232044 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  JE76HU_RS16530 (O76HUS_31450) csrA 3233637..3233822 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=92470 JE76HU_RS16485 WP_001130207.1 3228759..3229274(-) (luxS) [Escherichia coli strain JNE132847]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=92470 JE76HU_RS16485 WP_001130207.1 3228759..3229274(-) (luxS) [Escherichia coli strain JNE132847]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment