Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AB4O66_RS03060 Genome accession   NZ_CP163132
Coordinates   631694..633127 (-) Length   477 a.a.
NCBI ID   WP_000809051.1    Uniprot ID   A0A0H2VDV8
Organism   Escherichia coli strain W4 isolate China:Kunming     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 626694..638127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O66_RS03025 (AB4O66_03025) elbB 627386..628039 (+) 654 WP_001300411.1 isoprenoid biosynthesis glyoxalase ElbB -
  AB4O66_RS03030 (AB4O66_03030) mtgA 628036..628764 (+) 729 WP_000047096.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  AB4O66_RS03035 (AB4O66_03035) yrbL 628761..629393 (-) 633 WP_000620398.1 PhoP regulatory network protein YrbL -
  AB4O66_RS03040 (AB4O66_03040) npr 629606..629878 (-) 273 WP_000216791.1 PTS phosphocarrier protein NPr -
  AB4O66_RS03045 (AB4O66_03045) rapZ 629875..630729 (-) 855 WP_000243741.1 RNase adapter RapZ -
  AB4O66_RS03050 (AB4O66_03050) ptsN 630775..631266 (-) 492 WP_000183676.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AB4O66_RS03055 (AB4O66_03055) hpf 631384..631671 (-) 288 WP_001176599.1 ribosome hibernation promoting factor -
  AB4O66_RS03060 (AB4O66_03060) rpoN/rpoN1 631694..633127 (-) 1434 WP_000809051.1 RNA polymerase factor sigma-54 Machinery gene
  AB4O66_RS03065 (AB4O66_03065) lptB 633175..633900 (-) 726 WP_000224099.1 LPS export ABC transporter ATP-binding protein -
  AB4O66_RS03070 (AB4O66_03070) lptA 633907..634464 (-) 558 WP_000669785.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  AB4O66_RS03075 (AB4O66_03075) lptC 634433..635008 (-) 576 WP_000030537.1 LPS export ABC transporter periplasmic protein LptC -
  AB4O66_RS03080 (AB4O66_03080) kdsC 635005..635571 (-) 567 WP_000030016.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  AB4O66_RS03085 (AB4O66_03085) kdsD 635592..636578 (-) 987 WP_001295557.1 arabinose-5-phosphate isomerase KdsD -
  AB4O66_RS03090 (AB4O66_03090) yrbG 636592..637569 (-) 978 WP_000922872.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53993.79 Da        Isoelectric Point: 4.3639

>NTDB_id=924673 AB4O66_RS03060 WP_000809051.1 631694..633127(-) (rpoN/rpoN1) [Escherichia coli strain W4 isolate China:Kunming]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPE
ELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIR
SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=924673 AB4O66_RS03060 WP_000809051.1 631694..633127(-) (rpoN/rpoN1) [Escherichia coli strain W4 isolate China:Kunming]
ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCACAGCTCCAACAGGCAATTCGTCTGTTGCA
GTTGTCGACGCTGGAACTTCAGCAGGAGCTACAGCAGGCGCTGGAGAGTAATCCGCTGCTTGAGCAAATCGACACTCATG
AAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACACTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAA
GAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGA
CGAGCTGCCGGTCTATCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTCGAGTTGACACCGTTTT
CCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGACACTGGTTATCTGACTGTCCCGCTGGAAGAT
ATTCTCGAAAGTATGGGCGATGAAGAGATTGACATCGACGAGGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCC
GGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGCCTGCTGATCCAACTCTCCCAATTCGATAAAACCACGCCGTGGCTGG
AAGAGGCCAGACTGATTATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGT
CTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCCGGGCAGTCGATCCAGACTGG
CGAACCTGAGTATGTCATTCCAGATGTGCTGGTGCGTAAGCATAACGGTCACTGGACGGTAGAACTCAACAGTGACAGCA
TTCCGCGTCTGCAAATCAACCAGCACTACGCCTCGATGTGCAATAACGCGCGCAACGATGGTGACAGCCAGTTTATCCGC
AGCAATCTGCAGGATGCCAAATGGTTGATCAAGAGTCTGGAAAGCCGTAACGATACGCTACTGCGCGTGAGTCGCTGTAT
CGTTGAACAGCAGCAAGCCTTCTTTGAGCAAGGTGAAGAATATATGAAACCGATGGTACTGGCCGATATCGCCCAGGCTG
TCGAAATGCATGAATCGACGATATCTCGCGTGACCACGCAAAAATACCTGCATAGTCCACGAGGCATTTTTGAACTGAAG
TATTTCTTTTCCAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTGGTGAAGAAATT
AATCGCGGCGGAAAACCCAGCGAAACCGTTGAGCGACAGCAAGTTAACCTCTTTGCTGTCGGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAGCTCGTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VDV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.223

100

0.465