Detailed information NTG0924573

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AB4O73_RS23820
• Genome accession: NZ_CP163115
• Coordinates: 4939287..4940312 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain W46 isolate China:Kunming
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4934287..4945312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4O73_RS23810 (AB4O73_23810)	rpmE	4936518..4936730 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AB4O73_RS23815 (AB4O73_23815)	priA	4936933..4939131 (+)	2199	WP_001550368.1	primosomal protein N'	Machinery gene
AB4O73_RS23820 (AB4O73_23820)	cytR	4939287..4940312 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
AB4O73_RS23825 (AB4O73_23825)	ftsN	4940404..4941363 (+)	960	WP_000068834.1	cell division protein FtsN	-
AB4O73_RS23830 (AB4O73_23830)	hslV	4941456..4941986 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AB4O73_RS23835 (AB4O73_23835)	hslU	4941996..4943327 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
AB4O73_RS23840 (AB4O73_23840)	menA	4943394..4944320 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AB4O73_RS23845 (AB4O73_23845)	rraA	4944413..4944898 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AB4O73_RS23850 (AB4O73_23850)	zapB	4944983..4945228 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=924573 AB4O73_RS23820 WP_000644908.1 4939287..4940312(+) (cytR) [Escherichia coli strain W46 isolate China:Kunming]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=924573 AB4O73_RS23820 WP_000644908.1 4939287..4940312(+) (cytR) [Escherichia coli strain W46 isolate China:Kunming]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625