Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AB4O73_RS18885 Genome accession   NZ_CP163115
Coordinates   3907960..3908952 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain W46 isolate China:Kunming     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3902960..3913952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4O73_RS18860 (AB4O73_18860) ygbN 3903615..3904979 (+) 1365 WP_000104457.1 GntP family transporter -
  AB4O73_RS18865 (AB4O73_18865) - 3905018..3905254 (-) 237 WP_000562982.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  AB4O73_RS18870 (AB4O73_18870) - 3905265..3906692 (-) 1428 WP_001551547.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  AB4O73_RS18875 (AB4O73_18875) - 3906692..3907285 (-) 594 WP_001237173.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  AB4O73_RS18880 (AB4O73_18880) - 3907432..3907839 (+) 408 WP_001208066.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB4O73_RS18885 (AB4O73_18885) rpoS 3907960..3908952 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  AB4O73_RS18890 (AB4O73_18890) nlpD 3909015..3910109 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  AB4O73_RS18895 (AB4O73_18895) pcm 3910294..3910920 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  AB4O73_RS18900 (AB4O73_18900) surE 3910914..3911675 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  AB4O73_RS18905 (AB4O73_18905) truD 3911656..3912705 (-) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  AB4O73_RS18910 (AB4O73_18910) ispF 3912702..3913181 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AB4O73_RS18915 (AB4O73_18915) ispD 3913181..3913891 (-) 711 WP_000246131.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=924554 AB4O73_RS18885 WP_000081550.1 3907960..3908952(-) (rpoS) [Escherichia coli strain W46 isolate China:Kunming]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=924554 AB4O73_RS18885 WP_000081550.1 3907960..3908952(-) (rpoS) [Escherichia coli strain W46 isolate China:Kunming]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715