Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PanNE5_RS19875 Genome accession   NZ_AP025517
Coordinates   4396521..4397894 (-) Length   457 a.a.
NCBI ID   WP_261938692.1    Uniprot ID   -
Organism   Pandoraea sp. NE5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4391521..4402894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PanNE5_RS19860 (PanNE5_39270) prmB 4391894..4392787 (+) 894 WP_017234107.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  PanNE5_RS19865 (PanNE5_39280) cls 4392899..4394326 (+) 1428 WP_017234106.1 cardiolipin synthase -
  PanNE5_RS19870 (PanNE5_39290) - 4394499..4396439 (+) 1941 WP_261938691.1 ATP-binding cassette domain-containing protein -
  PanNE5_RS19875 (PanNE5_39300) radA 4396521..4397894 (-) 1374 WP_261938692.1 DNA repair protein RadA Machinery gene
  PanNE5_RS19880 (PanNE5_39310) alr 4397918..4398988 (-) 1071 WP_017234103.1 alanine racemase -
  PanNE5_RS19885 (PanNE5_39320) lplT 4399326..4400618 (+) 1293 WP_017234102.1 lysophospholipid transporter LplT -
  PanNE5_RS19890 (PanNE5_39330) thiD 4400620..4401444 (+) 825 WP_261938693.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PanNE5_RS19895 (PanNE5_39340) - 4401506..4402648 (-) 1143 WP_261938694.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48111.29 Da        Isoelectric Point: 7.2379

>NTDB_id=92452 PanNE5_RS19875 WP_261938692.1 4396521..4397894(-) (radA) [Pandoraea sp. NE5]
MAKAKTVYICTECGGQTPKWAGQCPHCNGWNSLVESVAEAPTGHRYQSLAKSTPVRKLAQIEAADVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLANLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTVYSEALSSAPGSVAQVRECAAQLTRSAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKISEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEHAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=92452 PanNE5_RS19875 WP_261938692.1 4396521..4397894(-) (radA) [Pandoraea sp. NE5]
ATGGCCAAAGCCAAGACTGTCTATATTTGTACCGAATGCGGCGGGCAGACGCCCAAGTGGGCGGGGCAGTGTCCCCACTG
CAACGGCTGGAATTCGCTCGTCGAATCGGTGGCGGAAGCGCCGACAGGTCATCGATACCAATCGCTCGCCAAGAGTACGC
CTGTGCGCAAGCTCGCGCAGATCGAGGCGGCCGATGTGCCGCGCTTCTCCAGCGGCGTGAGCGAATTCGACCGCGTGCTG
GGCGGCGGTCTGGTTGCCGGCGGCGTGGTGCTCATCGGGGGAGATCCCGGGATCGGCAAGTCGACGCTGCTGCTTCAGTC
GCTTGCAAATCTGGCGCGCGAACGGCGTGCGCTGTATGTGAGCGGCGAAGAATCGGGCGCGCAGATTGCCTTGCGTGCGC
AGCGCCTGGGCCTCGGCGCCGCGGGCGAGGGCGGCGGGGAATTGGATTTGCTGGCGGAAATCCAGCTCGAGAAGATTCTG
GGCGCCATCGAGTCGGAGAAGCCCGACGTGGTCGTGATCGACTCGATCCAGACGGTCTACTCAGAAGCGCTCAGTTCGGC
GCCGGGATCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAACTCACGCGCAGCGCCAAGCAGAGCGGCGTAACGGTGATCA
TGGTTGGCCACGTAACCAAGGAAGGCAGTCTCGCCGGGCCGCGCGTTCTCGAACACATCGTCGACACGGTGCTGTATTTC
GAGGGCGATACGCACTCGTCGTACCGGTTGGTGCGGGCGTTCAAAAATCGCTTCGGTGCCGTCAACGAGTTGGGCGTGTT
TGCGATGACGGAGAAAGGCCTGCGCGGCGTGGCGAATCCGTCGGCCTTGTTCCTCTCGCAACATGAGCAAAGCGTGCCGG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAGGTGCAGGCGCTGGTCGACACGGCGCAGGTG
CCCAATCCGCGGCGTTTGGCCGTGGGGCTGGAGCAGAACCGGCTGGCCATGTTGCTCGCCGTGATGCATCGTCATGCGGG
CATCGCCTGTTTCGATCAGGATGTGTTCCTGAACGCCGTCGGCGGCGTGAAGATCTCGGAGCCGGCGGCCGATCTGGCCG
TATTGCTGGCAATTCATTCGTCGCTGCGCAACAAGCCGTTGCCGCGCGGCATCGTAGCATTCGGCGAGGTCGGGCTGGCG
GGCGAAATCCGGCCGAGCCCGCGCGGTCAGGATCGTCTCAAGGAAGCCGCCAAACTGGGCTTTTCGATTGCGATCATCCC
GAAGGCGAATGCGCCGAAGCAACCCATCGACGGCCTCGAAGTGCATGCCGTCGACCGTTTGGAGCACGCGATTTCCGTCG
TGGCGGGGTTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.401

100

0.497
  radA Streptococcus pneumoniae Rx1

48.837

94.092

0.46
  radA Streptococcus pneumoniae D39

48.837

94.092

0.46
  radA Streptococcus pneumoniae R6

48.837

94.092

0.46
  radA Streptococcus pneumoniae TIGR4

48.837

94.092

0.46
  radA Streptococcus mitis SK321

48.837

94.092

0.46
  radA Streptococcus mitis NCTC 12261

48.837

94.092

0.46

Multiple sequence alignment