Detailed information NTG0924439

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB4O85_RS05350
• Genome accession: NZ_CP163067
• Coordinates: 1093756..1094748 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain W137
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1088756..1099748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4O85_RS05320 (AB4O85_05320)	ispD	1088817..1089527 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB4O85_RS05325 (AB4O85_05325)	ispF	1089527..1090006 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB4O85_RS05330 (AB4O85_05330)	truD	1090003..1091052 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AB4O85_RS05335 (AB4O85_05335)	surE	1091033..1091794 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
AB4O85_RS05340 (AB4O85_05340)	pcm	1091788..1092414 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AB4O85_RS05345 (AB4O85_05345)	nlpD	1092599..1093693 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AB4O85_RS05350 (AB4O85_05350)	rpoS	1093756..1094748 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB4O85_RS05355 (AB4O85_05355)	ygbN	1094842..1096205 (-)	1364	Protein_1050	GntP family transporter	-
AB4O85_RS05360 (AB4O85_05360)	ygbM	1096294..1097070 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
AB4O85_RS05365 (AB4O85_05365)	ygbL	1097075..1097713 (-)	639	WP_001278994.1	aldolase	-
AB4O85_RS05370 (AB4O85_05370)	otnK	1097710..1098972 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=924439 AB4O85_RS05350 WP_000081550.1 1093756..1094748(+) (rpoS) [Escherichia coli strain W137]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=924439 AB4O85_RS05350 WP_000081550.1 1093756..1094748(+) (rpoS) [Escherichia coli strain W137]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715