Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU50_RS16735 Genome accession   NZ_AP025515
Coordinates   521063..522148 (-) Length   361 a.a.
NCBI ID   WP_060469481.1    Uniprot ID   A0A109D5S9
Organism   Vibrio toranzoniae strain CECT 7225     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 516063..527148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS16715 yegD 516105..517457 (-) 1353 WP_060469484.1 molecular chaperone -
  OCU50_RS16720 - 517618..517926 (+) 309 WP_077681677.1 DUF1289 domain-containing protein -
  OCU50_RS16725 - 518002..518364 (-) 363 WP_060469483.1 HopJ type III effector protein -
  OCU50_RS16730 luxQ 518493..521063 (-) 2571 WP_060469482.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCU50_RS16735 luxP 521063..522148 (-) 1086 WP_060469481.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OCU50_RS16740 - 522454..522768 (-) 315 WP_060469480.1 GIY-YIG nuclease family protein -
  OCU50_RS16745 - 522769..523425 (-) 657 WP_060469479.1 YceH family protein -
  OCU50_RS16750 - 523490..523690 (-) 201 WP_017058678.1 hypothetical protein -
  OCU50_RS16755 - 523885..524199 (+) 315 WP_004730049.1 DUF496 family protein -
  OCU50_RS16760 - 524296..526869 (-) 2574 WP_060469574.1 ATP-binding protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41164.38 Da        Isoelectric Point: 5.3095

>NTDB_id=92431 OCU50_RS16735 WP_060469481.1 521063..522148(-) (luxP) [Vibrio toranzoniae strain CECT 7225]
MKRLLMLFGITVFSTSSLSHALNGYWEYQDYLSKFPKQKILTDKMVEAVQNHPVPLRLVQDRPITISVVYPGRQISDYWV
RNIQAFEKRLDKLRINYQINQVFTRVNADINQQSISLQEAVENKTDYLIFTLDTTRHRKFIEHVLSYTDTKLILQNITTP
VRAWSDRQPFMYVGFDHATGSLKLADYFKEVSQPDSQYSVLYRSEGYISDARGDTFIREVNSDTNFALKSSFYTKSDKES
SYQAAKISIENDKNLDFIYACSTDVALGAAEAIRESGRDILVNGWGGGSAELEAIESGDLDVTVMRMNDDTGIAMAEAIK
WDLSGLKVPTVYSGEFEVVTSEDSPERISELKKRAFRYSGQ

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=92431 OCU50_RS16735 WP_060469481.1 521063..522148(-) (luxP) [Vibrio toranzoniae strain CECT 7225]
ATGAAACGTTTACTTATGTTGTTTGGAATTACCGTATTTTCTACGTCCTCCCTTTCCCACGCTCTCAATGGATATTGGGA
ATATCAAGATTACCTTTCTAAGTTTCCAAAGCAAAAAATATTGACCGATAAAATGGTCGAAGCTGTTCAAAACCATCCCG
TGCCATTGAGGCTAGTTCAAGATAGGCCTATTACTATTTCAGTCGTGTACCCTGGTCGACAGATTTCCGACTACTGGGTG
CGCAATATTCAAGCGTTTGAAAAGCGCCTCGATAAATTGAGAATCAACTATCAGATCAATCAGGTTTTTACACGTGTTAA
TGCTGATATCAATCAACAGAGTATTTCTCTACAAGAGGCGGTTGAAAATAAAACTGATTATTTAATTTTTACGCTAGATA
CGACGCGACACCGTAAATTTATTGAACATGTGCTGAGTTATACGGATACCAAACTGATCTTGCAAAATATTACCACTCCT
GTGCGAGCGTGGTCTGATAGACAGCCGTTTATGTATGTAGGTTTTGATCATGCGACAGGGAGTTTGAAATTGGCGGACTA
TTTTAAAGAAGTGAGTCAACCAGACAGTCAGTACTCTGTTCTTTATCGTTCAGAAGGTTATATAAGTGACGCTCGTGGAG
ATACCTTTATTCGTGAAGTGAACTCCGATACAAATTTTGCACTTAAGTCTTCGTTTTACACCAAGTCTGATAAAGAGAGC
AGTTACCAAGCGGCTAAAATCAGCATAGAGAACGATAAAAATCTAGACTTTATCTATGCATGTTCAACCGATGTTGCTTT
GGGAGCCGCTGAAGCGATTCGTGAGTCTGGTAGGGATATCTTAGTCAATGGCTGGGGAGGCGGATCGGCAGAGCTCGAAG
CAATCGAAAGTGGGGACCTAGATGTGACAGTTATGCGTATGAATGATGATACTGGGATCGCGATGGCAGAGGCAATCAAA
TGGGATCTCAGTGGCTTGAAAGTTCCTACCGTTTACTCCGGTGAGTTTGAAGTGGTGACCAGCGAAGATTCCCCAGAACG
TATTTCTGAGCTTAAGAAGCGCGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(66-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D5S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

61.983

100

0.623

Multiple sequence alignment