Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU50_RS13200 Genome accession   NZ_AP025514
Coordinates   2901173..2902177 (+) Length   334 a.a.
NCBI ID   WP_017055857.1    Uniprot ID   A0A2N7JD19
Organism   Vibrio toranzoniae strain CECT 7225     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2896173..2907177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS13185 - 2896531..2897820 (-) 1290 WP_060468758.1 malic enzyme-like NAD(P)-binding protein -
  OCU50_RS13190 rpmE 2898170..2898388 (-) 219 WP_017055855.1 50S ribosomal protein L31 -
  OCU50_RS13195 priA 2898731..2900932 (+) 2202 WP_060468759.1 primosomal protein N' -
  OCU50_RS13200 cytR 2901173..2902177 (+) 1005 WP_017055857.1 DNA-binding transcriptional regulator CytR Regulator
  OCU50_RS13205 ftsN 2902300..2902833 (+) 534 WP_060468760.1 cell division protein FtsN -
  OCU50_RS13210 hslV 2903057..2903605 (+) 549 WP_017055859.1 ATP-dependent protease subunit HslV -
  OCU50_RS13215 hslU 2903664..2905004 (+) 1341 WP_060468761.1 HslU--HslV peptidase ATPase subunit -
  OCU50_RS13220 - 2905194..2906111 (+) 918 WP_060468762.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU50_RS13225 rraA 2906185..2906700 (+) 516 WP_017055862.1 ribonuclease E activity regulator RraA -
  OCU50_RS13230 zapB 2906790..2907032 (-) 243 WP_009848877.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36548.06 Da        Isoelectric Point: 6.8459

>NTDB_id=92424 OCU50_RS13200 WP_017055857.1 2901173..2902177(+) (cytR) [Vibrio toranzoniae strain CECT 7225]
MATMKDVAQLAGVSTATVSRALMTPEKVSVSTRKRVEAAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGTKAVRQLLALPEQPTA
IFCHNDSMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQTGSRLLE
AKLVVRGSTAPPRI

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=92424 OCU50_RS13200 WP_017055857.1 2901173..2902177(+) (cytR) [Vibrio toranzoniae strain CECT 7225]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACCGCAACGGTATCACGTGCATTGATGACCCCAGAAAA
AGTCTCAGTTTCTACTCGCAAACGAGTAGAGGCAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTCGAAACT
TACGTCGCAACGAATCAAAAACCATCATTACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCAGCTGTAGAAAATGATTACCTAGTTCTGCTTGGCGACAGTGGTCAACAGAAGAAACGTGAATCATCATT
TGTAAACTTGGTGTTCACCAAACAGGCTGATGGCATGCTACTGCTTGGCACCGACCACCCATTTGATGTCAGTAAATCTG
AACAGAAGAACTTACCACCTATGGTGATGGCATGTGAGTTTGCACCTGAACTTGAGTTACCAACGGTACACATCGATAAC
TTGACGTCTGCATTTGAAGCCGTCAACTATCTAGCTCAGTTAGGTCACAAGCGCATCGCACAAATATCTGGCCCAACCTC
CGCCACTCTATGTAAGTTCCGTCAACAAGGCTACCAACAGGCATTACGCCGAGCTGGTGTATCAATGAACCCAGCTTACA
GTACTGTTGGTGATTTTACCTTTGAAGCTGGAACAAAAGCCGTTCGTCAATTATTAGCACTACCGGAACAACCAACCGCA
ATTTTCTGTCATAACGATTCAATGGCAATTGGCGCTATTCAAGAAGCAAAAAAATTAGGTTTGCGTGTTCCTCAAGACCT
CTCCATTGTTGGTTTTGATGACATCCAATTCGCTCAATACTGCGATCCACCACTAACGACCATTTCTCAGCCTCGTTACG
AAATCGGACGCCAAGCGATGCTGATGATGCTCGACCTACTTAAAGGTAACGATGTTCAAACAGGTTCACGTCTACTTGAA
GCTAAACTCGTGGTTCGTGGCAGTACAGCGCCACCTCGAATTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JD19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

88.855

99.401

0.883
  cytR Vibrio parahaemolyticus RIMD 2210633

87.087

99.701

0.868

Multiple sequence alignment