Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU50_RS11765 Genome accession   NZ_AP025514
Coordinates   2629691..2630209 (-) Length   172 a.a.
NCBI ID   WP_060468589.1    Uniprot ID   A0A109D827
Organism   Vibrio toranzoniae strain CECT 7225     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2624691..2635209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS11740 rimM 2624759..2625313 (-) 555 WP_017056602.1 ribosome maturation factor RimM -
  OCU50_RS11745 rpsP 2625338..2625586 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  OCU50_RS11750 ffh 2625798..2627183 (-) 1386 WP_060468587.1 signal recognition particle protein -
  OCU50_RS11755 - 2627384..2628178 (+) 795 WP_046223306.1 inner membrane protein YpjD -
  OCU50_RS11760 - 2628307..2629578 (+) 1272 WP_060468588.1 HlyC/CorC family transporter -
  OCU50_RS11765 luxS 2629691..2630209 (-) 519 WP_060468589.1 S-ribosylhomocysteine lyase Regulator
  OCU50_RS11770 - 2630234..2630884 (-) 651 WP_082710350.1 hypothetical protein -
  OCU50_RS11775 gshA 2630895..2632463 (-) 1569 WP_060468590.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18992.72 Da        Isoelectric Point: 4.4901

>NTDB_id=92411 OCU50_RS11765 WP_060468589.1 2629691..2630209(-) (luxS) [Vibrio toranzoniae strain CECT 7225]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTVPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92411 OCU50_RS11765 WP_060468589.1 2629691..2630209(-) (luxS) [Vibrio toranzoniae strain CECT 7225]
ATGCCTTTATTAGATAGTTTCACTGTTGATCATACACGCATGAACGCACCAGCCGTTCGTGTCGCGAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACTTGCGTTTTACCGTGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ACACGCTAGAGCACCTATACGCTGGATTCATGCGTAATCAACTGAACGGTTCAGATGTAGAGATTATCGATATCTCACCG
ATGGGGTGTCGTACCGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAGCAACAAGTGGCAGACGGATGGTTGGCTGC
AATGCAAGACGTACTGAAAGTTGAGAATCAAAATAAGATCCCTGAACTGAACGAATACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCTAACGCGATCATCGCTGCAGGTATCTCTGTAAACAAGAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAAATTGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D827

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment