Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB0R08_RS21490 Genome accession   NZ_CP162609
Coordinates   4835042..4836064 (+) Length   340 a.a.
NCBI ID   WP_408994808.1    Uniprot ID   -
Organism   Streptomyces sp. 1268     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4830042..4841064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS21470 - 4831437..4831946 (+) 510 WP_408993043.1 GNAT family N-acetyltransferase -
  AB0R08_RS21475 - 4832040..4832870 (-) 831 WP_408993044.1 ABC transporter ATP-binding protein -
  AB0R08_RS21480 - 4832867..4833886 (-) 1020 WP_006128970.1 ABC transporter substrate-binding protein -
  AB0R08_RS21485 - 4833923..4834786 (-) 864 WP_093437442.1 ABC transporter permease -
  AB0R08_RS21490 cytR 4835042..4836064 (+) 1023 WP_408994808.1 LacI family DNA-binding transcriptional regulator Regulator
  AB0R08_RS21495 - 4836114..4836698 (-) 585 WP_148904985.1 GAF domain-containing protein -
  AB0R08_RS21500 - 4836695..4837318 (-) 624 WP_010057974.1 ATP/GTP-binding protein -
  AB0R08_RS21505 - 4837296..4837667 (-) 372 WP_006128964.1 DUF742 domain-containing protein -
  AB0R08_RS21510 - 4837670..4838104 (-) 435 WP_006128963.1 roadblock/LC7 domain-containing protein -
  AB0R08_RS21515 - 4838110..4840287 (-) 2178 WP_408993045.1 ATP-binding protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 35723.02 Da        Isoelectric Point: 10.3276

>NTDB_id=924065 AB0R08_RS21490 WP_408994808.1 4835042..4836064(+) (cytR) [Streptomyces sp. 1268]
MTLDAVAREAGVSLATASRALNGTTRVRDDLRGRVRAAADLLGYIPNAHAQALASAEGNRTVGLICHDVGDPYFAGIASG
VMRAAAEQDLLVMLASTFREPAREIAYVSMLRAQRARAILLIGSGFQDRAWERAMDAELEPYVRAGGRVAVVSRHRSMRV
DTVQPENRAGAAALAASLVALGHRDFAVLSGPPELTTVADRLAGFREGLAAAGITLRRVVRGAFTREGGHAAARQLLAAG
DARPTCVFAVTDVMAVGALAALREAGVRVPEDMSLAGFDDIPVVREVSPPLTTVALPLTEMGEQVIALALRTPSRAGRSR
VLRIEGNVVLRGSTGAPPKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=924065 AB0R08_RS21490 WP_408994808.1 4835042..4836064(+) (cytR) [Streptomyces sp. 1268]
GTGACGCTCGACGCGGTGGCACGCGAGGCCGGCGTATCGCTCGCCACCGCGTCCCGGGCCCTCAACGGCACGACCAGGGT
CCGCGACGATCTGCGCGGCCGGGTGCGCGCGGCGGCCGATCTCCTCGGTTACATCCCCAACGCCCATGCCCAGGCCCTCG
CGAGCGCCGAGGGCAACCGTACGGTGGGGCTGATCTGCCACGACGTGGGCGACCCGTACTTCGCGGGCATCGCCAGCGGG
GTGATGCGCGCGGCGGCCGAACAGGACCTGCTGGTGATGCTGGCCTCCACCTTCCGGGAACCGGCGCGGGAGATCGCGTA
CGTCTCGATGCTGCGGGCCCAGCGGGCGCGGGCCATCCTGCTGATCGGCTCCGGCTTCCAGGACCGGGCCTGGGAGCGGG
CGATGGACGCCGAGCTGGAGCCGTACGTCCGGGCGGGCGGCCGGGTCGCGGTGGTCAGCCGGCACCGGTCCATGCGGGTG
GACACCGTCCAGCCGGAGAACCGGGCCGGGGCGGCGGCGCTCGCGGCCTCGCTGGTGGCGCTCGGGCACCGGGACTTCGC
GGTGCTCAGCGGTCCGCCCGAACTGACCACGGTGGCCGACCGGTTGGCAGGGTTCCGTGAGGGGCTGGCCGCCGCGGGCA
TCACCCTTCGGCGGGTGGTGCGGGGCGCGTTCACCCGGGAGGGCGGGCACGCGGCGGCGCGTCAGCTGCTGGCCGCCGGG
GACGCCCGGCCGACCTGCGTGTTCGCGGTGACCGATGTGATGGCGGTCGGCGCGCTGGCCGCGCTGCGGGAGGCCGGTGT
GCGCGTCCCCGAGGACATGTCGCTCGCGGGGTTCGACGACATCCCCGTCGTACGGGAGGTGTCGCCGCCGCTGACCACGG
TGGCGCTGCCGCTCACGGAGATGGGCGAGCAGGTGATCGCCCTCGCTCTGCGGACGCCGTCGCGGGCGGGGCGTTCCCGG
GTGCTGCGGATCGAGGGGAACGTGGTCCTGCGGGGCAGTACCGGTGCGCCGCCCAAAAGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-47)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.447

100

0.362