Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB0R08_RS20220 Genome accession   NZ_CP162609
Coordinates   4568005..4570455 (+) Length   816 a.a.
NCBI ID   WP_408992952.1    Uniprot ID   -
Organism   Streptomyces sp. 1268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4563005..4575455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS20195 - 4564292..4564507 (+) 216 WP_006129191.1 dodecin -
  AB0R08_RS20200 - 4564508..4564996 (-) 489 WP_006129190.1 hypothetical protein -
  AB0R08_RS20205 - 4565098..4566099 (+) 1002 WP_408994798.1 MsnO8 family LLM class oxidoreductase -
  AB0R08_RS20210 - 4566131..4566685 (-) 555 WP_408992950.1 CGNR zinc finger domain-containing protein -
  AB0R08_RS20215 - 4566742..4567965 (+) 1224 WP_408992951.1 MFS transporter -
  AB0R08_RS20220 uvrA 4568005..4570455 (+) 2451 WP_408992952.1 excinuclease ABC subunit UvrA Machinery gene
  AB0R08_RS20225 - 4570507..4571253 (-) 747 WP_006129184.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  AB0R08_RS20230 - 4571250..4573199 (-) 1950 WP_109195255.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  AB0R08_RS20235 - 4573201..4573869 (-) 669 WP_109195256.1 succinate dehydrogenase cytochrome b subunit -
  AB0R08_RS20240 - 4574002..4574898 (+) 897 WP_107414454.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 86838.11 Da        Isoelectric Point: 6.9099

>NTDB_id=924063 AB0R08_RS20220 WP_408992952.1 4568005..4570455(+) (uvrA) [Streptomyces sp. 1268]
MHSPHDPYVRVRGAREHNLKDVSVDIPRDTLTVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGDYPPGAERLDSDSFSPNTAVGACPECHGLGRIHRTDEEL
LVPDPSLSIREGAIAAWPGAWQGKNLRDVLDALGHDVDRPWRELDPKDREWILFTDEQPVVTVHPVRDAGRIQRPYQGTY
MSARRYVLHTFADTKSRSLRAKAERFLTSAPCPVCGGSRLRAEAMAVTFAGRTIAELAGLPLSDLAEVLSGARADGAGAG
GEETARVLTADLLARIGTVTELGLGYLSLDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLGVL
GRLKEAGNSVFVVEHQMDVVRRADWLVDVGPLAGEHGGRVLHSGPPEGLAQVPESATRRFLFPGDGRDTAPVREPRTPSG
WIRLTGVERHNVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGVLADRQAGEEATGASERFCASVTGLEAVGRLVQVD
QKPIGRTPRSNLATYTGLFDAVRKLFARTEKARERGYGAGRFSFNVSGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGA
RYNPQTLDVTLDGLTIAQVLDLTVESAASFFAGTPAAERALRTLLDVGLGYLRLGQPATELSGGEAQRIKLAAELQRTRR
GHTLYLLDEPTTGLHPADVEVLMRQLHALVDGGSTVVVVEHDMAVVAGADQVIDLGPEGGDRGGRIVASGTPAEVARTAG
SRTAPYLAKALNARGS

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=924063 AB0R08_RS20220 WP_408992952.1 4568005..4570455(+) (uvrA) [Streptomyces sp. 1268]
ATGCACTCCCCCCACGATCCGTACGTCCGGGTGCGTGGCGCCCGCGAACACAATCTCAAGGACGTCAGCGTCGACATCCC
GCGCGACACCCTGACCGTGTTCACGGGTGTGTCGGGATCGGGGAAGTCCTCGCTCGCCTTCGGGACGCTCTACGCGGAGG
CCCAGCGCCGCTACTTCGAGTCCGTGGCCCCCTACGCCCGCCGACTGATCCACCAGGTGGGCGCACCCGCCGTCGGGGAG
ATCACCGGGCTGCCGCCCGCCGTCTCGCTGGAGCAGCGGCGCTCCGCACCGGGGGCCCGGTCGTCCGTCGGGACGGTCAC
CACGCTCTCCAACTCGTTGCGGATGCTGTTCTCCCGGGCCGGGGACTATCCGCCGGGGGCCGAGCGGCTGGACTCCGATT
CCTTCTCCCCCAACACGGCGGTCGGGGCGTGCCCGGAGTGCCACGGGCTGGGGCGGATCCACCGGACGGACGAGGAGCTG
CTCGTCCCGGATCCCTCCCTGTCGATCCGGGAGGGGGCGATCGCCGCCTGGCCGGGGGCGTGGCAGGGGAAGAACCTGCG
CGACGTGCTGGACGCGCTGGGCCACGACGTCGACCGGCCCTGGCGGGAGCTGGACCCGAAGGACCGCGAGTGGATCCTGT
TCACCGACGAGCAGCCCGTGGTGACCGTGCATCCGGTGCGGGACGCGGGCCGGATCCAACGCCCTTACCAGGGAACGTAC
ATGAGCGCGCGGCGCTATGTGCTGCACACCTTCGCCGACACCAAGAGCCGGTCGCTGCGGGCGAAGGCCGAGCGCTTTCT
GACCAGTGCCCCGTGCCCGGTGTGCGGCGGGAGCCGGCTGCGGGCCGAGGCGATGGCGGTGACCTTCGCGGGGCGGACCA
TCGCGGAACTGGCCGGGCTGCCGCTGTCCGATCTGGCCGAGGTGCTGTCGGGTGCCAGGGCCGACGGTGCGGGGGCGGGC
GGCGAGGAGACGGCCCGGGTACTGACGGCCGATCTGCTGGCGCGGATCGGGACGGTGACGGAGCTGGGCCTCGGCTATCT
GAGCCTGGACCGCACGGCCCCGACGCTGTCCTCGGGTGAGCTGCAACGGCTGCGGCTGGCCACGCAGTTGCGGTCCGGGC
TCTTCGGTGTCGTGTACGTCCTGGACGAGCCGTCGGCCGGGCTGCATCCGGCGGACACCGAGGCGCTGCTCGGGGTGCTG
GGGCGGCTCAAGGAGGCCGGGAACTCGGTCTTCGTCGTGGAGCACCAGATGGACGTGGTGCGGCGGGCGGACTGGCTGGT
TGACGTGGGCCCGCTGGCCGGGGAGCACGGCGGGCGGGTGCTGCACAGCGGGCCGCCGGAGGGGCTCGCCCAGGTCCCGG
AGTCGGCGACGCGCCGCTTCCTGTTCCCCGGGGACGGCCGGGACACCGCACCGGTCCGTGAGCCGCGCACCCCGTCCGGG
TGGATCCGGCTCACCGGCGTGGAGCGGCACAATGTGCGCGGCGTCGACGCGGCGTTCCCGCTCGGGGTGTTCACGGCGGT
GACGGGGGTGTCCGGCTCGGGCAAGTCGACCCTGGTCGGGCAGGTGCTCGCCGGGGTGCTGGCCGACCGGCAGGCGGGCG
AGGAGGCGACCGGGGCGAGCGAGCGGTTCTGCGCTTCCGTCACCGGTCTTGAGGCGGTGGGCCGGCTCGTCCAGGTCGAC
CAGAAGCCCATCGGGCGTACACCCCGGTCCAACCTGGCGACGTACACCGGCCTGTTCGACGCCGTACGGAAGCTGTTCGC
GCGGACGGAGAAGGCCCGGGAGCGCGGCTACGGCGCGGGGCGGTTCTCGTTCAACGTGAGCGGCGGACGGTGCGAGACCT
GCCAGGGCGAGGGCTTCGTCTCGGTGGAGCTGCTGTTCCTGCCCAGCACCTACGCGCCCTGCCCGGACTGTCACGGTGCG
CGCTACAACCCCCAGACGCTGGACGTCACGCTGGACGGTCTGACGATCGCCCAGGTCCTGGATCTGACCGTGGAGTCGGC
GGCCTCCTTCTTTGCCGGGACGCCCGCAGCGGAGCGCGCGCTGAGGACCCTGCTGGACGTGGGGCTCGGCTATCTGCGGC
TCGGACAGCCCGCCACGGAGCTGTCCGGCGGTGAGGCGCAGCGCATCAAGCTGGCGGCGGAGCTCCAGCGCACCCGGCGC
GGGCACACGCTGTATCTGCTGGACGAGCCGACGACGGGGCTGCATCCGGCCGATGTGGAGGTGCTGATGCGGCAGTTGCA
CGCGCTGGTCGACGGCGGGAGCACCGTGGTGGTCGTGGAGCACGACATGGCCGTGGTGGCGGGCGCGGACCAGGTCATCG
ACCTCGGCCCCGAGGGCGGGGACCGGGGCGGCCGGATCGTCGCGTCCGGCACCCCGGCCGAGGTGGCGCGCACCGCCGGG
AGCCGTACGGCGCCGTATCTGGCGAAGGCGCTGAACGCACGCGGGAGTTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-265)

ABC transporter (ABC_tran)

(494-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.106

84.436

0.364
  uvrA Streptococcus pneumoniae TIGR4

43.106

84.436

0.364
  uvrA Streptococcus pneumoniae D39

43.106

84.436

0.364