Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCU50_RS07680 Genome accession   NZ_AP025514
Coordinates   1745875..1747056 (+) Length   393 a.a.
NCBI ID   WP_060467836.1    Uniprot ID   A0A109D9W3
Organism   Vibrio toranzoniae strain CECT 7225     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740875..1752056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS07660 purT 1741603..1742778 (+) 1176 WP_060467834.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OCU50_RS07665 - 1742908..1743561 (-) 654 WP_017057451.1 thiopurine S-methyltransferase -
  OCU50_RS07670 - 1743886..1744662 (+) 777 WP_060467835.1 RelA/SpoT domain-containing protein -
  OCU50_RS07675 ihfA 1744775..1745071 (-) 297 WP_004734853.1 integration host factor subunit alpha -
  OCU50_RS07680 cqsA 1745875..1747056 (+) 1182 WP_060467836.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCU50_RS07685 - 1747200..1749248 (-) 2049 WP_060467837.1 response regulator -
  OCU50_RS07690 - 1749674..1750558 (-) 885 WP_060467838.1 Vmh family MBL fold metallo-hydrolase -
  OCU50_RS07695 - 1750722..1751615 (+) 894 WP_060467839.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44004.11 Da        Isoelectric Point: 6.5610

>NTDB_id=92400 OCU50_RS07680 WP_060467836.1 1745875..1747056(+) (cqsA) [Vibrio toranzoniae strain CECT 7225]
MSDKFENKPLPSFIEERLNFYVQDLITPNKNQRHLVLGKRPKSNAVVMQSNDYLSLSHNVNIQTAHRDAISKHDDNVVMS
AIFLQDEQSKPAFETELADYVGMESCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAYPFMHNNMN
HLRKQIQRNGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCALVVDESHSLGTHGKNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKNSDDKRDTLFKRVKTLTTGLKQIGFNIRSESQ
IVALECGSERNTEHVRDFLEERNVFGAVFCRPATGKNKNIIRFSVNADMTSQDIDHVLRVCDEAFNHPELEFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=92400 OCU50_RS07680 WP_060467836.1 1745875..1747056(+) (cqsA) [Vibrio toranzoniae strain CECT 7225]
ATGAGTGATAAATTTGAAAATAAACCCTTACCTTCCTTTATCGAAGAACGCTTGAACTTTTATGTTCAAGACCTCATTAC
CCCAAACAAAAACCAAAGGCACTTGGTATTAGGGAAACGCCCCAAGTCGAACGCCGTGGTTATGCAGAGTAATGACTACC
TATCACTATCGCATAACGTGAACATCCAAACAGCACATAGGGATGCGATCTCAAAGCACGATGATAATGTAGTGATGTCT
GCCATATTTTTGCAAGATGAACAATCTAAGCCAGCGTTTGAAACCGAACTCGCAGACTATGTTGGGATGGAAAGCTGTTT
GCTGTCCCAGTCTGGTTGGGCTGCGAATATTGGGCTGTTGCAAACTATCTGCCCACCTAATACTCCGGTGTATATCGATT
TCTTTGCACACATGTCCCTATGGGAAGGAATTCGTGCTGCTGGAGCTCATGCTTACCCGTTTATGCACAACAACATGAAT
CACCTGCGTAAACAGATCCAACGTAATGGATCAGGCGTGATTGTGGTCGACTCTGTTTATAGCACCATTGGCACTATTGC
CCCACTACGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCTTTGGTCGTTGATGAGTCGCACTCGTTAGGTACTC
ATGGTAAAAATGGGGCGGGTTTGGTTCAAGCTTTAGGGCTGACCAACAAAGTGGATTTCATTACCGTGAGTTTAGCCAAG
ACATTCGCTTATCGTGCCGGTGCTATTCTTGGACCTAAACGGCTATCAGAGACCCTTCCATTTGTCGCTTACCCCGCGAT
TTTCAGCTCTACCGTGCTGCCACAAGAAGTCATTCGCTTAGAAAAAACGTTAGAGGTAATCAAAAACTCTGATGATAAGC
GAGACACCTTATTCAAACGAGTCAAAACGCTCACAACAGGCCTAAAACAAATAGGCTTTAACATTCGTAGCGAGTCACAA
ATCGTGGCCTTAGAATGCGGTAGCGAAAGAAACACGGAGCATGTGCGTGACTTCCTCGAAGAACGGAATGTGTTTGGTGC
TGTATTTTGTCGCCCTGCAACGGGAAAAAACAAGAACATCATCCGATTCTCAGTGAATGCTGACATGACTTCGCAAGATA
TAGACCATGTTCTCAGGGTGTGCGATGAGGCATTTAACCACCCTGAATTAGAGTTCATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D9W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.072

98.473

0.552

Multiple sequence alignment