Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCU50_RS07640 Genome accession   NZ_AP025514
Coordinates   1737730..1739154 (+) Length   474 a.a.
NCBI ID   WP_060467832.1    Uniprot ID   A0A109D9I8
Organism   Vibrio toranzoniae strain CECT 7225     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732730..1744154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS07620 - 1733469..1734419 (+) 951 WP_060467828.1 hypothetical protein -
  OCU50_RS07625 - 1734424..1735458 (-) 1035 WP_060467829.1 AraC family transcriptional regulator -
  OCU50_RS07630 - 1735606..1736619 (+) 1014 WP_060467830.1 DUF2804 domain-containing protein -
  OCU50_RS07635 - 1736674..1737522 (+) 849 WP_060467831.1 sterol desaturase family protein -
  OCU50_RS07640 sbcB 1737730..1739154 (+) 1425 WP_060467832.1 exodeoxyribonuclease I Machinery gene
  OCU50_RS07645 - 1739180..1739551 (+) 372 WP_017057447.1 CidA/LrgA family protein -
  OCU50_RS07650 - 1739554..1740231 (+) 678 WP_046224077.1 LrgB family protein -
  OCU50_RS07655 cdd 1740548..1741435 (+) 888 WP_060467833.1 cytidine deaminase -
  OCU50_RS07660 purT 1741603..1742778 (+) 1176 WP_060467834.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OCU50_RS07665 - 1742908..1743561 (-) 654 WP_017057451.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54629.05 Da        Isoelectric Point: 5.2569

>NTDB_id=92399 OCU50_RS07640 WP_060467832.1 1737730..1739154(+) (sbcB) [Vibrio toranzoniae strain CECT 7225]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITGITPQKAMTQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPTPLLDLDSEALRDRLYTKRTELAEDELPVPIKLVHLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSHEREYKKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDESEQLKWANHCREFYESHLEEYMLNLENLAHKHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=92399 OCU50_RS07640 WP_060467832.1 1737730..1739154(+) (sbcB) [Vibrio toranzoniae strain CECT 7225]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCGGCAAAAGACCGTCCAAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAGCCTTTGGTTATCTATTGCCAGCCTCCTGCTG
ATTATTTGCCTGCACCTGAGGCCGCATTGATCACTGGTATCACGCCACAAAAAGCAATGACTCAAGGCCTACCTGAACCT
GAGTTTATCGCTAAGATTCATGCCGAACTTGCTAAGCCAAACACCACAAGCCTTGGCTACAACAGCATCCGATTCGATGA
CGAAGTAACGAGATACACCTGTTACCGTAACTTCATTGATCCGTATGCATGGAGTTGGCAAAACGGTAACTCACGCTGGG
ATCTACTCGACGTAATGCGCGCCGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGACGAAGGCTTCCCA
AGTTTCAAACTGGAACACCTCTCTGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATCGC
GACTATCGAATTAGCGAAAAAGCTGAAAGCCGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGCCACAAACGTA
AATTGAACGAGTTAGTCGACATCGTAAACATGACACCTCTAATGCACGTATCAGGTATGTTCGGCCGTGATTGTAATTAC
ACCAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAACCAAAATGCCGTTATAGTGGTGGATTTAGCAAAAGATCCAAC
ACCTTTACTTGACCTAGATTCAGAAGCTTTACGTGACAGGCTCTATACTAAGCGCACTGAACTTGCTGAAGACGAGTTAC
CAGTACCAATCAAATTGGTTCATTTAAACAAGTGCCCTATTCTTGCGCCAGCAAAAACGCTGACCGCAGAAAACGCGGAA
ACTATTGGTATCGACCGTCAGCAATGTTTGAAAAACTTGGCACTGTTACGCGAACATCCAGAAATCCGTGAAAAATTGAT
TGGTTTGTACTCACACGAAAGAGAGTACAAGAAGAGTGACGATGTCGACACTCACCTTTACGATGGTTTCTTCTCACCAG
CCGATAAAACAGCGATGAACATCATTCGTGAAACAGACCCAAACAACTTGGCGGCTTTAGATATTACTTTTAGTGACGAA
CGAATTAAGCCTTTGTTGTTCCGTTATCGCGCTCGCCACTTTCCATGGACGCTCGACGAATCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAGTTCTATGAGAGCCACTTAGAAGAGTACATGCTGAATCTAGAAAATCTCGCGCACAAGCATGAAA
GTGACGAGAAGAAAATGGCGATCTTAAAGGCGGTTTATCAGTACGTTGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D9I8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.167

99.789

0.77

Multiple sequence alignment