Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU50_RS04455 Genome accession   NZ_AP025514
Coordinates   991095..992483 (+) Length   462 a.a.
NCBI ID   WP_060467334.1    Uniprot ID   A0A109DAB9
Organism   Vibrio toranzoniae strain CECT 7225     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 986095..997483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS04435 rsxB 986642..987235 (-) 594 WP_060467332.1 electron transport complex subunit RsxB -
  OCU50_RS04440 rsxA 987238..987816 (-) 579 WP_046222689.1 electron transport complex subunit RsxA -
  OCU50_RS04450 uvrB 988763..990793 (+) 2031 WP_060467333.1 excinuclease ABC subunit UvrB -
  OCU50_RS04455 luxO 991095..992483 (+) 1389 WP_060467334.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU50_RS04460 luxU 992507..992851 (+) 345 WP_017056506.1 quorum-sensing phosphorelay protein LuxU -
  OCU50_RS04465 - 992951..993838 (-) 888 WP_060467335.1 YvcK family protein -
  OCU50_RS04470 moaA 994173..995162 (+) 990 WP_060467336.1 GTP 3',8-cyclase MoaA -
  OCU50_RS04475 moaB 995519..996031 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  OCU50_RS04480 moaC 996044..996523 (+) 480 WP_060467337.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU50_RS04485 moaD 996520..996765 (+) 246 WP_055319720.1 molybdopterin synthase sulfur carrier subunit -
  OCU50_RS04490 moaE 996768..997241 (+) 474 WP_060467338.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51773.38 Da        Isoelectric Point: 6.6130

>NTDB_id=92394 OCU50_RS04455 WP_060467334.1 991095..992483(+) (luxO) [Vibrio toranzoniae strain CECT 7225]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGSQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENRL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKP

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=92394 OCU50_RS04455 WP_060467334.1 991095..992483(+) (luxO) [Vibrio toranzoniae strain CECT 7225]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCAGCTTTATATCG
CTCTTATCTGACACCGCTCGAAATTGATATCAACATTGTCGGTACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCAGATCTAATTTTGTTAGATCTGCGTCTTCCTGATATGACGGGCATGGACGTGCTGTTTGCAGTAAAACAAAAATAC
CCTGAAGTGCCCGTTATCTTCATGACGGCTCACGGTTCTATTGATACTGCTGTAGAAGCCATGCGTCATGGTTCTCAAGA
CTTCCTTATCAAACCGTGTGAAGCCGACCGACTCCGTATTACGGTGAATAACGCGATTCGTAAAGCCACCAAGCTTAAAA
ACAGCTCGGAGCATCCAGGGAGCCAAAACTATCAAGGCTTCATTGGTAGTAGCCAAACCATGCAGCAGGTTTACCGAACC
ATCGATTCTGCCGCATCAAGTAAGGCGAGTATTTTTATCACAGGTGAAAGTGGTACTGGTAAAGAAGTATGTGCAGAAGC
CATTCATGCAGCGAGTAAGCGTGGTGATAAGCCTTTCATCGCCATCAACTGTGCGGCAATTCCTAAAGACTTGATTGAAA
GTGAGCTGTTTGGCCACGTCAAAGGTGCCTTTACGGGCGCGGCAACCGATCGCCAAGGTGCTGCTGAACTTGCTGATGGC
GGAACTTTGTTCCTCGATGAGCTGTGTGAGATGGACCTTGAACTGCAAACCAAGCTTCTGCGTTTTATCCAAACGGGTAC
TTTTCAAAAAGTCGGCTCTTCGAAGATGAAGAGTGTGGACGTTCGTTTTGTTTGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATCCCTCTTCACTTGCCGCCACTGCGTGAG
CGTGGGGAAGATGTCATCGAGATCGCATACTCGCTACTAGGCTACATGTCGGTTGAGGAAGGTAAGGCTTTCGTACGCTT
TGCTCAGGAAGTGCTTGATCGCTTTAATCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAATGTGTTGCGAAACG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTCCCACCTCCACTGAACCAGCCGATTGAGAATCGTCTG
CGGTTGAAAGAGAAACAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAAGCCATTAAAGCGTGTGACGGTAATATCCCTCGCGCGGCTGGTTTCTTGGATGTCAGTCCATCAACGATTTACCGTA
AATTGCAAACGTGGAATGCGAAGCCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DAB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

96.97

0.836

Multiple sequence alignment