Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   AB3470_RS19330 Genome accession   NZ_CP162517
Coordinates   3647186..3648343 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   Q3LHN6
Organism   Bacillus subtilis strain BF12B1     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3642186..3653343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS19300 (AB3470_19290) yvyF 3642439..3642858 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AB3470_RS19305 (AB3470_19295) comFC 3642932..3643654 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  AB3470_RS19310 (AB3470_19300) comFB 3643618..3643914 (-) 297 WP_015483764.1 late competence protein ComFB -
  AB3470_RS19315 (AB3470_19305) comFA 3643974..3645365 (-) 1392 WP_140600026.1 ATP-dependent helicase ComFA Machinery gene
  AB3470_RS19320 (AB3470_19310) fakBA 3645471..3646316 (-) 846 WP_003244125.1 DegV family protein -
  AB3470_RS19325 (AB3470_19315) degU 3646414..3647103 (-) 690 WP_003219701.1 two-component system response regulator DegU -
  AB3470_RS19330 (AB3470_19320) degS 3647186..3648343 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AB3470_RS19335 (AB3470_19325) yvyE 3648560..3649213 (+) 654 WP_003227979.1 YigZ family protein -
  AB3470_RS19340 (AB3470_19330) tagV 3649213..3650388 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AB3470_RS19345 (AB3470_19335) tagO 3650461..3651537 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  AB3470_RS19350 (AB3470_19340) tuaH 3651682..3652875 (-) 1194 WP_072692828.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=923920 AB3470_RS19330 WP_003227983.1 3647186..3648343(-) (degS) [Bacillus subtilis strain BF12B1]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=923920 AB3470_RS19330 WP_003227983.1 3647186..3648343(-) (degS) [Bacillus subtilis strain BF12B1]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGAGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterProScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3LHN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1