Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   AB3470_RS17405 Genome accession   NZ_CP162517
Coordinates   3259011..3259874 (-) Length   287 a.a.
NCBI ID   WP_043858576.1    Uniprot ID   A8D459
Organism   Bacillus subtilis strain BF12B1     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3254011..3264874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS17370 (AB3470_17360) mrpE 3254179..3254655 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AB3470_RS17375 (AB3470_17365) mrpF 3254655..3254939 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AB3470_RS17380 (AB3470_17370) mnhG 3254923..3255297 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  AB3470_RS17385 (AB3470_17375) yuxO 3255336..3255716 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  AB3470_RS17390 (AB3470_17380) comA 3255735..3256379 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AB3470_RS17395 (AB3470_17385) comP 3256460..3258772 (-) 2313 WP_069703660.1 histidine kinase Regulator
  AB3470_RS17400 (AB3470_17390) comX 3258788..3259009 (-) 222 WP_014480704.1 competence pheromone ComX -
  AB3470_RS17405 (AB3470_17395) comQ 3259011..3259874 (-) 864 WP_043858576.1 polyprenyl synthetase family protein Regulator
  AB3470_RS17410 (AB3470_17400) degQ 3260059..3260199 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AB3470_RS17415 (AB3470_17405) - 3260421..3260483 (+) 63 Protein_3367 hypothetical protein -
  AB3470_RS17420 (AB3470_17410) - 3260661..3261029 (+) 369 WP_017695529.1 hypothetical protein -
  AB3470_RS17425 (AB3470_17415) pdeH 3261005..3262234 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  AB3470_RS17430 (AB3470_17420) pncB 3262371..3263843 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  AB3470_RS17435 (AB3470_17425) pncA 3263859..3264410 (-) 552 WP_038828671.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32760.38 Da        Isoelectric Point: 4.9534

>NTDB_id=923906 AB3470_RS17405 WP_043858576.1 3259011..3259874(-) (comQ) [Bacillus subtilis strain BF12B1]
MKEIVDENILNEDLKVKLISFIEEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGECNETVEEYSRYLGVVEQIANDHYGLYYPNNNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=923906 AB3470_RS17405 WP_043858576.1 3259011..3259874(-) (comQ) [Bacillus subtilis strain BF12B1]
ATGAAGGAGATTGTAGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCGAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTACTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAGGTAATAGGCTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATGTAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTGTAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACAATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(46-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8D459

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

44.286

97.561

0.432