Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AB3470_RS16405 Genome accession   NZ_CP162517
Coordinates   3074498..3075208 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain BF12B1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3069498..3080208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS16385 (AB3470_16380) cysK 3069550..3070485 (+) 936 WP_003229237.1 cysteine synthase A -
  AB3470_RS16390 (AB3470_16385) pepV 3070519..3071910 (-) 1392 WP_014477689.1 dipeptidase PepV -
  AB3470_RS16395 (AB3470_16390) pbuO 3072007..3073305 (+) 1299 WP_029726423.1 hypoxanthine/guanine permease PbuO -
  AB3470_RS16400 (AB3470_16395) ythQ 3073344..3074501 (-) 1158 WP_029726424.1 ABC transporter permease -
  AB3470_RS16405 (AB3470_16400) pptA 3074498..3075208 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  AB3470_RS16410 (AB3470_16405) ytzE 3075499..3075720 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  AB3470_RS16415 (AB3470_16410) rsuA 3075842..3076561 (-) 720 WP_017695479.1 pseudouridine synthase -
  AB3470_RS16420 (AB3470_16415) murJ 3076630..3078264 (-) 1635 WP_015251430.1 lipid II flippase MurJ -
  AB3470_RS16425 (AB3470_16420) ytfP 3078467..3079729 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=923902 AB3470_RS16405 WP_015714539.1 3074498..3075208(-) (pptA) [Bacillus subtilis strain BF12B1]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=923902 AB3470_RS16405 WP_015714539.1 3074498..3075208(-) (pptA) [Bacillus subtilis strain BF12B1]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAGCTGGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432