Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCV44_RS15730 Genome accession   NZ_AP025511
Coordinates   301496..302590 (-) Length   364 a.a.
NCBI ID   WP_139684370.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 296496..307590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS15710 - 297150..297458 (+) 309 WP_139684374.1 DUF1289 domain-containing protein -
  OCV44_RS15715 - 297565..297915 (-) 351 WP_139684373.1 HopJ type III effector protein -
  OCV44_RS15720 - 298109..298768 (+) 660 WP_139684372.1 PilZ domain-containing protein -
  OCV44_RS15725 luxQ 298896..301496 (-) 2601 WP_139684371.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCV44_RS15730 luxP 301496..302590 (-) 1095 WP_139684370.1 substrate-binding domain-containing protein Regulator
  OCV44_RS15735 - 302900..303214 (-) 315 WP_139684369.1 GIY-YIG nuclease family protein -
  OCV44_RS15740 - 303215..303871 (-) 657 WP_139684368.1 YceH family protein -
  OCV44_RS15745 - 303935..304135 (-) 201 WP_086050698.1 hypothetical protein -
  OCV44_RS15750 - 304331..304645 (+) 315 WP_004730049.1 DUF496 family protein -
  OCV44_RS15755 - 304834..305460 (+) 627 WP_139684367.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCV44_RS15760 - 305625..305861 (+) 237 WP_139684366.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41067.33 Da        Isoelectric Point: 5.4800

>NTDB_id=92387 OCV44_RS15730 WP_139684370.1 301496..302590(-) (luxP) [Vibrio tasmaniensis strain LMG 20012]
MKRLLILLGVAVFSASALSHGTHVLNGYWEYQDYLTKFPEQKALTDKMVEAVQNPPMPLRQVQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRDNANPTQQSISLQEAIENKTDYLIFTLETTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHMTGSLKLANYFKKVSEPGSKYSVLYRSEGYISDARGDTFIHDVNSDTNFALKSSFYTKSS
KESGYQAAKISLANDKDLNFIYACATDVALGAAEAIRESGRDVLVNGWGGGSAELDALARGDLDVTVMRMNDDTGIAMAE
AIKWDLTGLEVPTVYSGEFEVVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=92387 OCV44_RS15730 WP_139684370.1 301496..302590(-) (luxP) [Vibrio tasmaniensis strain LMG 20012]
ATGAAACGTTTACTTATATTATTGGGAGTTGCCGTGTTTTCTGCGTCTGCTCTCTCCCACGGTACTCACGTCCTGAATGG
CTATTGGGAATATCAGGATTACCTCACTAAATTTCCAGAGCAAAAAGCATTGACCGATAAAATGGTTGAAGCTGTGCAAA
ATCCCCCTATGCCGTTGAGGCAAGTTCAGGATGAACCTATCACGATTTCAGTTGTGTACCCGGGGCAACAGATCTCCGAC
TATTGGGTTCGTAATATTCAAGCCTTTGAGAAACGCCTAGATAAATTGAGAATTAATTATCAAATAAATCAGGTTTTTAC
TCGTGACAATGCTAACCCCACTCAGCAGAGTATCTCTTTGCAAGAAGCGATTGAAAATAAAACGGATTATTTGATTTTTA
CGTTAGAGACGACGCGACACCGTAAGTTTATTGAACACGTGTTGAGCTCAACGGACACCAAATTGATTTTGCAAAATATT
ACCACGCCAGTACGTGCGTGGGCAGATAGGCAGCCGTTCATGTACGTGGGTTTCGACCATATGACGGGCAGTTTAAAGCT
AGCGAATTACTTCAAAAAAGTGAGTGAACCGGGCAGCAAATATTCTGTGTTATATCGCTCTGAAGGTTATATTAGTGATG
CTCGTGGAGATACGTTTATCCATGATGTGAATTCTGATACTAACTTTGCTCTTAAGTCGTCGTTTTACACTAAATCAAGT
AAAGAGAGCGGTTACCAAGCAGCTAAAATCAGCCTAGCGAACGATAAGGATCTAAACTTCATTTATGCATGTGCAACTGA
TGTCGCTCTGGGCGCAGCAGAAGCGATTCGAGAATCTGGCCGAGATGTCTTAGTGAATGGTTGGGGAGGCGGCTCCGCAG
AATTGGACGCTCTAGCAAGGGGCGACTTAGATGTTACGGTCATGCGGATGAATGATGATACGGGTATTGCGATGGCAGAG
GCGATTAAATGGGATCTTACCGGATTGGAAGTGCCTACTGTCTATTCAGGAGAGTTTGAAGTTGTGACTAAAGAGGATTC
TCCAGAACGTATTTCAGAACTTAAGCAGCGAGCATTTAGGTACTCAGGCCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.842

100

0.632

Multiple sequence alignment