Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AB3470_RS08140 Genome accession   NZ_CP162517
Coordinates   1542560..1543585 (+) Length   341 a.a.
NCBI ID   WP_029726516.1    Uniprot ID   -
Organism   Bacillus subtilis strain BF12B1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537560..1548585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS08105 (AB3470_08095) ylbE 1537860..1538099 (+) 240 WP_003232231.1 YlbE-like family protein -
  AB3470_RS08110 (AB3470_08100) ylbF 1538215..1538664 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AB3470_RS08115 (AB3470_08105) ylbG 1538719..1538991 (+) 273 WP_024573211.1 YlbG family protein -
  AB3470_RS08120 (AB3470_08110) rsmD 1539314..1539868 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB3470_RS08125 (AB3470_08115) coaD 1539873..1540358 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AB3470_RS08130 (AB3470_08120) spoVV 1540369..1541595 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  AB3470_RS08135 (AB3470_08125) ylbK 1541776..1542558 (+) 783 WP_003232221.1 patatin family protein -
  AB3470_RS08140 (AB3470_08130) sepM 1542560..1543585 (+) 1026 WP_029726516.1 protease DdcP Regulator
  AB3470_RS08145 (AB3470_08135) tmcAL 1543602..1544849 (-) 1248 WP_029726515.1 nucleotidyltransferase -
  AB3470_RS08150 (AB3470_08140) - 1544846..1545031 (-) 186 WP_003232215.1 hypothetical protein -
  AB3470_RS08155 (AB3470_08145) ylbN 1545059..1545577 (+) 519 WP_069703525.1 DUF177 domain-containing protein -
  AB3470_RS08160 (AB3470_08150) rpmF 1545599..1545778 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  AB3470_RS08165 (AB3470_08155) gerR 1545924..1546505 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  AB3470_RS08170 (AB3470_08160) ylbP 1546562..1547044 (-) 483 WP_014476736.1 N-acetyltransferase -
  AB3470_RS08175 (AB3470_08165) panEA 1547204..1548100 (+) 897 WP_069703524.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37650.29 Da        Isoelectric Point: 8.1012

>NTDB_id=923844 AB3470_RS08140 WP_029726516.1 1542560..1543585(+) (sepM) [Bacillus subtilis strain BF12B1]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEKGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=923844 AB3470_RS08140 WP_029726516.1 1542560..1543585(+) (sepM) [Bacillus subtilis strain BF12B1]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAAAAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTTAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGTTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402