Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV44_RS07315 Genome accession   NZ_AP025510
Coordinates   1584709..1586220 (-) Length   503 a.a.
NCBI ID   WP_139683931.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579709..1591220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS07295 - 1579981..1581099 (-) 1119 WP_139683935.1 glycosyltransferase -
  OCV44_RS07300 - 1581092..1581877 (-) 786 WP_139683934.1 DapH/DapD/GlmU-related protein -
  OCV44_RS07305 - 1581970..1583346 (-) 1377 WP_139683933.1 O-antigen ligase family protein -
  OCV44_RS07310 - 1583604..1584728 (-) 1125 WP_139683932.1 glycosyltransferase family 4 protein -
  OCV44_RS07315 luxO 1584709..1586220 (-) 1512 WP_139683931.1 sigma-54 dependent transcriptional regulator Regulator
  OCV44_RS07320 - 1586443..1586847 (-) 405 WP_139683930.1 Hpt domain-containing protein -
  OCV44_RS07325 - 1587257..1588489 (-) 1233 WP_139683929.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  OCV44_RS07330 - 1588482..1589381 (-) 900 WP_054547760.1 proline/glycine betaine ABC transporter permease -
  OCV44_RS07335 - 1589525..1590517 (-) 993 WP_065205217.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 56313.52 Da        Isoelectric Point: 5.8252

>NTDB_id=92370 OCV44_RS07315 WP_139683931.1 1584709..1586220(-) (luxO) [Vibrio tasmaniensis strain LMG 20012]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHSPQLVILDLKLPDMPGEEVLDWISESEIPTAVIIA
TAHGSVNIAVDLIQRGAEDFLEKPIQADRLKTSVRLHLKRAKLENLVDDIQSKFDRDRFHNFIGSCLPMQAVYKIIDSVA
PTTASVFINGESGTGKEVCAEAIHQESQRNGKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGNREIKVDVRIICATNRDPLVEVEEGRFREDLYYRVHVVPIEMPPLRERGRDI
VTLANHFLKLYAKQDKKKFKTIDKETQNLFKRYVWPGNVRQLQNIIRNIVVLNNETSVTKDMLPPPINRVDAAPASKSVT
PIRAAAPQAAVVEAPEAKLPPITPEELEQSSVVPANNDPITPAFTTSEGAIRPMWQIEREAIQHAINHCDGNVLNAAVLL
ELSPSTVYRKKQAWESEDEYNQA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=92370 OCV44_RS07315 WP_139683931.1 1584709..1586220(-) (luxO) [Vibrio tasmaniensis strain LMG 20012]
ATGCGCCCTAAGGTATTGTTAGTTGAAGACTCCACATCACTCGCCGTACTCTACAAGCAGTACGTAAAAGACGAGCCCTA
CGATATTTTCCACGTCGAAACCGGCGCGGAAGCGAAGACCTTCATTGAAAGACACTCACCACAGCTTGTTATTCTCGATC
TTAAGCTGCCCGACATGCCAGGTGAAGAAGTACTTGATTGGATTAGCGAAAGTGAAATACCAACCGCCGTCATCATCGCG
ACAGCACATGGCTCAGTAAATATTGCTGTAGATCTCATCCAGCGCGGTGCGGAAGATTTCTTAGAAAAGCCAATTCAAGC
CGATCGACTTAAGACCTCTGTCCGCTTGCATTTGAAACGAGCTAAGCTAGAGAACCTCGTTGATGACATACAAAGCAAGT
TTGATCGTGACCGCTTTCATAATTTCATTGGCTCTTGCCTACCTATGCAAGCTGTCTACAAGATCATTGATTCGGTAGCG
CCAACCACTGCTAGCGTGTTTATTAACGGCGAAAGTGGTACGGGTAAAGAAGTGTGTGCGGAAGCGATTCATCAGGAGAG
TCAGCGTAACGGCAAGCCCTTCGTTGCCATTAACTGTGGCGCTATCCCTCGAGACCTAATGGAGAGTGAAATCTTCGGTC
ACGTTAAAGGTGCGTTTACCGGTGCAACAACCGACCGTAAAGGCGCGGCGATGCTAGCGCATGGTGGCACCCTATTTCTC
GATGAGCTTTGCGAAATGGAACTGGAGATGCAGAAGAAGCTCCTACGATTTCTGCAAACTGGCACGTTTACTCCACTCGG
TGGTAATCGCGAGATTAAAGTGGATGTCAGAATTATCTGCGCGACCAACCGCGACCCACTGGTTGAGGTCGAAGAAGGAC
GCTTTAGAGAAGACCTTTACTATCGTGTTCACGTTGTACCTATCGAGATGCCACCGCTTCGTGAACGAGGACGTGACATT
GTGACTTTAGCTAATCACTTTTTGAAGCTGTACGCGAAGCAAGACAAGAAGAAGTTCAAAACCATAGACAAAGAAACGCA
GAATCTGTTTAAACGTTATGTGTGGCCAGGTAACGTGCGTCAGTTGCAAAACATCATCCGTAACATCGTGGTGTTGAACA
ACGAAACGAGCGTGACCAAAGACATGTTACCGCCTCCGATTAATAGAGTAGACGCAGCTCCAGCCTCAAAATCAGTGACA
CCTATTCGAGCAGCTGCGCCCCAAGCTGCTGTTGTGGAAGCACCAGAAGCTAAGTTGCCACCTATTACTCCGGAAGAGTT
GGAGCAATCCTCAGTTGTCCCCGCTAACAACGACCCGATCACGCCCGCATTTACGACAAGCGAAGGTGCTATTCGTCCAA
TGTGGCAAATAGAGCGCGAAGCCATTCAACATGCCATCAATCATTGCGATGGGAATGTGTTAAACGCTGCCGTTCTGTTA
GAGCTTAGCCCTTCTACTGTTTATCGTAAGAAACAGGCTTGGGAATCGGAAGATGAGTACAATCAAGCCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(454-490)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.693

97.217

0.483

Multiple sequence alignment