Detailed information NTG0092369

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCV44_RS06630
• Genome accession: NZ_AP025510
• Coordinates: 1450468..1451892 (-)
• Length: 474 a.a.
• NCBI ID: WP_139684041.1
• Uniprot ID: -
• Organism: Vibrio tasmaniensis strain LMG 20012
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1445468..1456892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV44_RS06605	-	1446092..1446745 (+)	654	WP_139684045.1	thiopurine S-methyltransferase	-
OCV44_RS06610	purT	1446876..1448051 (-)	1176	WP_139684044.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCV44_RS06615	cdd	1448218..1449105 (-)	888	WP_139684043.1	cytidine deaminase	-
OCV44_RS06620	-	1449391..1450068 (-)	678	WP_139684042.1	LrgB family protein	-
OCV44_RS06625	-	1450071..1450442 (-)	372	WP_004734867.1	CidA/LrgA family protein	-
OCV44_RS06630	sbcB	1450468..1451892 (-)	1425	WP_139684041.1	exodeoxyribonuclease I	Machinery gene
OCV44_RS06635	-	1452098..1452946 (-)	849	WP_139684040.1	sterol desaturase family protein	-
OCV44_RS06640	-	1453034..1454047 (-)	1014	WP_139684039.1	DUF2804 domain-containing protein	-
OCV44_RS06645	-	1454281..1455324 (+)	1044	WP_139684038.1	AraC family transcriptional regulator	-
OCV44_RS06650	-	1455516..1456037 (+)	522	WP_012604134.1	DUF2058 domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54693.98 Da
• Isoelectric Point: 4.8224

>NTDB_id=92369 OCV44_RS06630 WP_139684041.1 1450468..1451892(-) (sbcB) [Vibrio tasmaniensis strain LMG 20012]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAVLITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKSAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWVVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=92369 OCV44_RS06630 WP_139684041.1 1450468..1451892(-) (sbcB) [Vibrio tasmaniensis strain LMG 20012]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCTGAAGCTGTGTTGATAACCCGTATCACACCACAGAAAGCGGCTTCACAAGGTCTCCCTGAGCCA
GAATTTATCGCTAAGATTCATGCTGAGTTAGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTAGATTCGATGA
CGAAGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCGTGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATCGAACATGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAATCAGCACAACCTAAGATGTTCGATTACCTTTACAATATGCGTCATAAGCGCA
AGCTGAATGACCTGGTTGATATTGTAAACATGACGCCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGCTGGGTTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCGGTTATCGTGGTTGATTTAGCGAAAGATCCAAG
CCCATTATTAGAGCTGGACGCTGATGAACTCAGAGAAAGGCTTTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTCC
CTGTGCCAATCAAATTGGTCCAACTGAACAAGTGCCCTATCCTTGCTCCAGCCAAAACGCTGACGGCTGAAAATGCCGAA
ACAATCGGTATCGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAACGAGAGTACGAGAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCAAATAACTTGGCCGCTTTGGATATCACCTTCAGCGACGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCGCGTAACTTCCCATGGACACTCGACGAAGCTGAGCAATTGAAATGGGC
GAACCATTGTCGAGAGTTTTATGAATGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.899	99.789	0.757