Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV44_RS06580 Genome accession   NZ_AP025510
Coordinates   1440490..1441671 (-) Length   393 a.a.
NCBI ID   WP_139684955.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1435490..1446671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS06565 - 1435987..1436889 (+) 903 WP_139684958.1 Vmh family MBL fold metallo-hydrolase -
  OCV44_RS06570 - 1437170..1437985 (+) 816 WP_139684957.1 TauD/TfdA family dioxygenase -
  OCV44_RS06575 - 1438257..1440305 (+) 2049 WP_139684956.1 response regulator -
  OCV44_RS06580 cqsA 1440490..1441671 (-) 1182 WP_139684955.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV44_RS06585 - 1442322..1442717 (-) 396 WP_139684048.1 DUF1090 domain-containing protein -
  OCV44_RS06590 - 1442861..1443670 (-) 810 WP_139684047.1 helix-turn-helix domain-containing protein -
  OCV44_RS06595 ihfA 1444423..1444719 (+) 297 WP_004734853.1 integration host factor subunit alpha -
  OCV44_RS06600 - 1444992..1445768 (-) 777 WP_139684046.1 RelA/SpoT domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43733.79 Da        Isoelectric Point: 6.2261

>NTDB_id=92368 OCV44_RS06580 WP_139684955.1 1440490..1441671(-) (cqsA) [Vibrio tasmaniensis strain LMG 20012]
MSDTTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRNAVVMQSNDYLALSHNKPIQEAHQAAIIEHDDNVVMS
AIFLQDEESKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPGTPVYIDFFAHMSLWEGIRAAGGIAHPFMHNNMN
HLRKQLERHGTGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTKQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKRQALFNRAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEQRDVFGAVFCRPATGRNKNIIRFSVNADMTPSDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=92368 OCV44_RS06580 WP_139684955.1 1440490..1441671(-) (cqsA) [Vibrio tasmaniensis strain LMG 20012]
ATGAGTGATACAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTCATTAC
CCAGAACCAAAGCCAAAAGCACTTGGTATTAGGTAAACGACCTCAGCGCAACGCCGTTGTTATGCAGAGCAATGATTACT
TAGCACTGTCACACAACAAACCGATCCAAGAGGCTCATCAAGCGGCGATCATCGAACACGATGACAACGTAGTGATGTCT
GCTATTTTCTTACAAGATGAAGAGTCTAAACCTGCATTTGAAACCGAACTCGCGAATTATGTCGGAATGGAGAGCTGTTT
ACTTTCTCAGTCGGGATGGGCGGCTAATATTGGGTTACTTCAAACGATCTGCCCTCCGGGCACACCTGTGTATATCGACT
TTTTTGCCCACATGTCGCTATGGGAAGGCATTCGTGCCGCTGGCGGCATTGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGCAAACAGCTAGAACGCCACGGCACAGGCGTTATTGTGGTCGATTCAGTTTACAGCACCATTGGGACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAGTTTGATTGTGCCGTCGTCGTTGATGAATCGCATTCACTGGGTACGC
ATGGGGAAAATGGTGCTGGCTTAGTTCACGCCTTGGGCCTCACTAAGCAAGTCGACTTCATCACCGTTAGTTTGGCTAAA
ACTTTTGCTTATCGTGCAGGGGCAATTCTTGGGCCGAAACAGCTTTCAGAAACCTTACCGTTTGTTGCTTATCCCGCGAT
TTTCAGTTCGACGGTATTACCACAAGAAGTGGTTCGTTTAGAGAAAACATTAGAGGTAATAAAAGGTGCAGAAGACAAAC
GACAAGCCTTATTCAATCGAGCTAAATCACTTACTACCGGCCTCAAACGAATTGGCTTTAATATCCGCAGCGAGTCTCAA
ATTGTGGCATTAGAGTGCGGTAGTGAAAGAAACACCGAGCGTGTTCGCGATTTCCTCGAACAGCGTGATGTGTTCGGTGC
TGTTTTTTGTCGCCCCGCTACGGGTAGGAACAAAAACATCATCCGCTTTTCAGTCAATGCCGACATGACACCTAGTGATA
TTGATCATGTTCTCACCGTTTGTCATGAGGCATACAATCATCCGGAGTTAGAGTTCGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55

Multiple sequence alignment