Detailed information NTG0092363

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: OCV44_RS03100
• Genome accession: NZ_AP025510
• Coordinates: 651566..654955 (-)
• Length: 1129 a.a.
• NCBI ID: WP_139684557.1
• Uniprot ID: -
• Organism: Vibrio tasmaniensis strain LMG 20012
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 646566..659955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV44_RS03085	-	646990..648015 (-)	1026	WP_004734531.1	ABC transporter permease	-
OCV44_RS03090	-	648018..649004 (-)	987	WP_004734532.1	ABC transporter permease	-
OCV44_RS03095	-	649174..650856 (-)	1683	WP_009847561.1	ABC transporter substrate-binding protein	-
OCV44_RS03100	chiS	651566..654955 (-)	3390	WP_139684557.1	response regulator	Regulator
OCV44_RS03105	rsmC	655173..656195 (-)	1023	WP_139684558.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
OCV44_RS03110	-	656306..657391 (-)	1086	WP_139684559.1	AI-2E family transporter	-
OCV44_RS03115	-	657468..657593 (+)	126	WP_009847557.1	hypothetical protein	-
OCV44_RS03120	hemL	657734..659029 (-)	1296	WP_012604713.1	glutamate-1-semialdehyde 2,1-aminomutase	-
OCV44_RS03125	erpA	659326..659667 (+)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127258.87 Da
• Isoelectric Point: 5.2704

>NTDB_id=92363 OCV44_RS03100 WP_139684557.1 651566..654955(-) (chiS) [Vibrio tasmaniensis strain LMG 20012]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARANAQQRYIKGSGDQIKTSILPESSSFIGSERYRLLHKRYHNSYLELLKRSDF
DDILLVDINGNIAYSVFKRDDYGTNLLTGKYKDANLGKTFQRLEKDVKDKRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNAQDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMLLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDINKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDSS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQEELDNYSDSGSYSHFQAPDLIDNNQQENSVISEDP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRVNNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDVMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIETLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=92363 OCV44_RS03100 WP_139684557.1 651566..654955(-) (chiS) [Vibrio tasmaniensis strain LMG 20012]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACTCTAATGCTGGCATTTCTTGTCCTTAGTATTAC
CCCGGTGACACTTATCGCGATATTTTTCCTCCAATCGCACAGTCAGGATCTTCAGGAACAAAGTACTTCACACCTTGTTT
CCGTCCGAGATACTAAACAGCAGCAAATTGTCGATTACCTACAAGCTCAAGAATCTCAAGTGATGGGCTTTGTTCGCTCA
GAGCTTGCCAATGCCAGTGGCGGACGATTCTATGGTTTGATCAATGCATTTCAACGCCTAGGATTAGATATTGACGAAGC
ACGCGCTAATGCGCAGCAGCGTTATATAAAAGGATCTGGCGATCAAATCAAAACATCGATTCTCCCTGAATCCAGCAGCT
TTATTGGCAGCGAGCGCTATCGTCTACTTCACAAGCGCTACCACAACTCTTATTTAGAGCTGCTTAAGCGTTCTGATTTT
GACGACATTTTATTGGTCGACATTAACGGTAACATCGCTTATTCAGTTTTTAAGCGCGATGACTACGGCACCAACTTACT
GACAGGTAAGTACAAAGATGCAAACCTTGGCAAAACCTTTCAACGCCTAGAAAAGGACGTAAAAGACAAACGTAAATCCA
ACGAAGACTACACGCCAGTTATCGTTTCTGACTTTAAAGACGAAAATGGTAAACAGACCGCATGGTTAGGCGCACCTATC
GTTCAACAGGGCTACCTACACAGTTACGCCATGTTTAGACTACCGATTAACGGTATTACGAAGCTGATCGCCGATCTCAA
CAAGAGCTCGAATATTCAGACCTTGCTTGTCGGCGATGATCATCTGCCGCGTAGCCTTGCCCATTCGCAAGAGTCGATTA
ATTTGAGTTTAGATGTTGTTGATAAAGCCCTTGCGGGAGAAACGGCCGTAGGCACCTTCGACAACGCTCAAGATCAAGCG
ATCATCGCTGCATATACTCCAATTGAACTCAAATATGCGACTTGGGCACTGGTCGTCGAGCTTCCAGAGAAAGAAGCGTT
TGCCCGTATCCATCAGTTAGAAAAGATCTTTGTGATCGTAATGCTGACGGCGATTATTCTTGTATTTGTCGCATCCCATT
ATCTGTCTAACTTCATTACATCACCGTTACTCAAGCTCACATGGGCAGCAGAGAAAGTCTCTGCTGGTGACCTTGATGAA
ACCATGATCAATACCGAACGAAAAGATGAGATAGGCCGCCTCGCAGTAAGCTTCGAAAGAATGCAGCGTTCGATTCGTGA
AAAGATGCTGCTCATTAAGAGCCAAAATGATGAGCTTGAGGACAATCTTAAGACCATTCAAAAACAAAATGAAGAGTTGC
AGCTTGCCAATAAACTGAAAGATGAATTCTTAGCAACAACATCACACGAATTGAGAACGCCATTACATGGCATGGTAGGT
ATTGCAGAAGCGCTAATATCTGGCGCAAACGGCCCTATCCCTGCCAACCAGAAGTACCAGTTGGATATCATCATCAATAG
TGGCCAGAGATTGGCAACACTGGTCGATGACCTACTTGATTACCACAAAATGCGCTACGGCAGCTTAGACATTAATAAAT
CGGCTGTTGATTTATCTGCTGCTACCAGCTTGGTACTCGAGTTGTCTCATCATCTGTTGGGCAATAAGCCAATCCGAATT
ATTAACCAAGTACCCAGTGATTTAGGGCTGGTTTCGTCCGATCCTCAACGACTGGAACAAGTGATGTATAACTTGGTCGG
CAATGCCATCAAGTACACATCAGAAGGTAAAATTGTTATCTCAGCAAGCGTTATCGACGACAACATTCGTGTACAAGTTG
TTGATACAGGCCAAGGCATACCTGCTGAATACCTAGAACACATCTTTGAACCCCTGATTCAAGCCGGGCAAGACTCTAGT
AACTATCGCCAAGGTGCAGGCCTTGGGTTGTCCATAAGTCGTCAGCTGATTGAACTGATGGGCGGTTCACTGTATGTAAG
TAGCCAGCCAATGCTTGGCACGACGTTCAGCTTTACCTTGCCTTTAGCCACCCAAGAAGAGTTGGATAACTACAGTGATT
CAGGAAGCTATTCTCACTTCCAAGCGCCAGATTTAATTGATAACAACCAACAAGAAAATAGTGTTATCAGTGAAGACCCA
GACGGTCCGTTACTGGTCATCGCCGATGATGAGCCTGTAAACTTACGCGTGCTAGACAGCTTCTTGAAATTGGAAGGTTA
TCGAGTACGCACCGCATGTGACGGCCCAGAAACCATTGAACTGATTGAGAAAGAGAAGCCAGAATTACTTCTTCTCGACA
TTATGATGCCGGGCATGAGTGGCTATCAGGTGTGTGAGGCGCTGCGTAAACAGTATGACCATGCACAATTGCCAATCATT
ATGCTCACTGCACTAAACCAAGCAGAAGATCGGGTTCGTGGCTTTGAAGCAGGTGCCAATGATTACTTGTCTAAGCCGTT
CAACAAACAAGAACTGGCGGCGCGAATTACGGCTCACTTATCAGCAAGTAAAGCTGAGCAAAGGCGTCTTGAGAATGACC
AATTGCAACTAGAGCTTAAACACAGAGCCATGGTTGAAGCTAACCTGCTAGAAACTCAAGGCCGCTTGCTAGAGCAGCTA
GAATCAGCCCCAGAGGCCATCATCTGTATTCGTGATGATCAACGTATTCGATTTGCCAATGAAGCAGCAGCAAAACTATT
TAGGCGTGGCCAAGAACAGCTTAAACGCTCGATGGCCGATGAGATCATTGCACCTAAATATCTTAAGGTGGAACAAGCTC
ACTATTGTGGTGATATTGACATCTATATAGACGACACACGTCAGCGCATACCAAGTGACATTCTCAAGCTACCTGAAGGC
TCAGGGCTCGACACCATGTATATCTTTAATGTCGGCGGTGGGGTTAATTCAAACCGAGTCAATAACCTTGAAACGGCAGT
TGAGGCACTTTCAAGCTACGCCTTTGAGGGTGACAAAGATAAACTTCAACAACTGAAGGAGCTTGGCGGTGAATTTACTC
GCCTTGCAGATAAAGCAACCGGTGAAGGTAAAAACAAACAAGAGCTGATGCGTGAAGTGCTGGTCGATGTCATGACTAAT
GCCATCATCTACTGGGAGTCTGTTACTGGGGAAACCAAGTTTGCCTTCGCAGAGAAGAGTGGCTTGTGGCGCGTCTACCT
AGACCGCAGTACCCTACAAACTCGAACGCTAGACAAATACCTACGCGTAGAAACGCTACCGAAAACACCTCGCTGGCGAA
CGGTACTGAGCTCTATCGAGTTTATACTTGAGCACTGTAAAGAACAGACTCCTGAAAGAACTCATATTGAGACACTAAGG
GATAAGCTACAAAAACTACTGACCAGTTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• PAS domain (PAS_8) (880-914)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	75.996	100	0.76