Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV44_RS02825 Genome accession   NZ_AP025510
Coordinates   583012..583530 (+) Length   172 a.a.
NCBI ID   WP_139686089.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 578012..588530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS02815 gshA 580758..582326 (+) 1569 WP_086050376.1 glutamate--cysteine ligase -
  OCV44_RS02820 - 582337..582987 (+) 651 WP_139686088.1 hypothetical protein -
  OCV44_RS02825 luxS 583012..583530 (+) 519 WP_139686089.1 S-ribosylhomocysteine lyase Regulator
  OCV44_RS02830 - 583708..584979 (-) 1272 WP_139686090.1 HlyC/CorC family transporter -
  OCV44_RS02835 - 585107..585901 (-) 795 WP_086048770.1 inner membrane protein YpjD -
  OCV44_RS02840 ffh 586102..587496 (+) 1395 WP_004735506.1 signal recognition particle protein -
  OCV44_RS02845 rpsP 587709..587957 (+) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18914.66 Da        Isoelectric Point: 4.6963

>NTDB_id=92357 OCV44_RS02825 WP_139686089.1 583012..583530(+) (luxS) [Vibrio tasmaniensis strain LMG 20012]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGSAVEIIDISP
MGCRTGFYMSLIGTPSEQQVAEAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGVSVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92357 OCV44_RS02825 WP_139686089.1 583012..583530(+) (luxS) [Vibrio tasmaniensis strain LMG 20012]
ATGCCTTTATTAGATAGTTTTACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATTACGGTATTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAGAGGTATTC
ATACTCTCGAGCACCTATACGCTGGGTTCATGCGTGCTCACCTCAATGGCTCTGCGGTTGAGATCATTGATATTTCGCCT
ATGGGTTGTCGTACTGGTTTCTATATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGAAGCTTGGTTAGCGGC
TATGCAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGTTGAACGAATATCAATGTGGTACCGCAGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATTGCGAATGCAATCATCGCTGCCGGTGTTTCAGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment