Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB3440_RS12750 Genome accession   NZ_CP162471
Coordinates   2564590..2565672 (-) Length   360 a.a.
NCBI ID   WP_001793589.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20819     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2559590..2570672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3440_RS12730 (AB3440_12730) - 2560198..2560302 (-) 105 WP_001790092.1 hypothetical protein -
  AB3440_RS12735 (AB3440_12735) secA 2560344..2562875 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  AB3440_RS12740 (AB3440_12740) raiA 2563289..2563861 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  AB3440_RS12745 (AB3440_12745) - 2563922..2564597 (-) 676 Protein_2466 ComF family protein -
  AB3440_RS12750 (AB3440_12750) comFA 2564590..2565672 (-) 1083 WP_001793589.1 DEAD/DEAH box helicase Machinery gene
  AB3440_RS12755 (AB3440_12755) fakB1 2566036..2566902 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  AB3440_RS12760 (AB3440_12760) - 2567046..2567687 (+) 642 WP_000192949.1 YigZ family protein -
  AB3440_RS12765 (AB3440_12765) - 2567859..2568914 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  AB3440_RS12770 (AB3440_12770) - 2569232..2570302 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42097.58 Da        Isoelectric Point: 9.7626

>NTDB_id=923508 AB3440_RS12750 WP_001793589.1 2564590..2565672(-) (comFA) [Staphylococcus aureus strain TUM20819]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=923508 AB3440_RS12750 WP_001793589.1 2564590..2565672(-) (comFA) [Staphylococcus aureus strain TUM20819]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369