Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCV44_RS01160 Genome accession   NZ_AP025510
Coordinates   254276..255280 (-) Length   334 a.a.
NCBI ID   WP_086048605.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 249276..260280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS01130 zapB 249433..249675 (+) 243 WP_009848877.1 cell division protein ZapB -
  OCV44_RS01135 rraA 249769..250287 (-) 519 WP_139685145.1 ribonuclease E activity regulator RraA -
  OCV44_RS01140 - 250361..251278 (-) 918 WP_086048603.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCV44_RS01145 hslU 251434..252774 (-) 1341 WP_139685146.1 HslU--HslV peptidase ATPase subunit -
  OCV44_RS01150 hslV 252833..253381 (-) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  OCV44_RS01155 - 253614..254153 (-) 540 WP_139685147.1 SPOR domain-containing protein -
  OCV44_RS01160 cytR 254276..255280 (-) 1005 WP_086048605.1 DNA-binding transcriptional regulator CytR Regulator
  OCV44_RS01165 priA 255521..257722 (-) 2202 WP_139685148.1 primosomal protein N' -
  OCV44_RS01170 rpmE 258054..258272 (+) 219 WP_009848884.1 50S ribosomal protein L31 -
  OCV44_RS01175 - 258604..259893 (+) 1290 WP_139685149.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36527.06 Da        Isoelectric Point: 6.4911

>NTDB_id=92344 OCV44_RS01160 WP_086048605.1 254276..255280(-) (cytR) [Vibrio tasmaniensis strain LMG 20012]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDVLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=92344 OCV44_RS01160 WP_086048605.1 254276..255280(-) (cytR) [Vibrio tasmaniensis strain LMG 20012]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTTTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAGCGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCTTATTTCGCAGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTCGTTCTACTGGGTGATAGCGGCCAACAGAAGAAGCGTGAGTCTTCATT
TGTTAATTTAGTATTCACTAAACAAGCTGATGGCATGCTACTGCTTGGTACCGACCATCCGTTTGATGTCAGTAAGCCTG
AACAAAAAAACTTACCGCCGATGGTGATGGCATGTGAGTTCGCCCCTGAGCTTGAACTCCCTACCGTACACATCGATAAC
CTGACCTCAGCATTTGAAGCAGTGAACTACCTAGCTCAGTTAGGTCACAAGCGTATCGCACAAATCTCTGGGCCAGTATC
AGCAACGCTTTGTAAGTTCCGCCAACAAGGCTACCAGCAAGCGCTACGTCGTGCAGGAGTCTCCATGAATCCAGCCTATA
GCACTGTCGGTGACTTTACCTTTGAAGCAGGAGCTCAAGCAGTTCGTCAATTACTCGCTCTTCCTGAACAACCGACCGCT
ATCTTCTGTCACAACGATGCGATGGCCATTGGCGCGATTCAAGAAGCGAAAAAATTGGGCTTACGCGTTCCTCAAGACCT
ATCCATTGTTGGCTTCGATGATATCCAATTCGCTCAATACTGCGATCCACCGCTAACGACTATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCGATGCTGATGATGCTCGACGTACTTAAAGGCAACGATGTACAAGCGGGGTCACGCCTGCTTGAA
GCTAAATTAGTCGTTCGAGGCAGTACTGCGCCACCTCGAATGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.387

99.701

0.871

Multiple sequence alignment