Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU90_RS17815 Genome accession   NZ_AP025509
Coordinates   82762..83856 (+) Length   364 a.a.
NCBI ID   WP_061023235.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 77762..88856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS17785 - 79482..79718 (-) 237 WP_061023231.1 hypothetical protein -
  OCU90_RS17790 - 79883..80509 (-) 627 WP_004730047.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  OCU90_RS17795 - 80708..81022 (-) 315 WP_004730049.1 DUF496 family protein -
  OCU90_RS17800 - 81218..81418 (+) 201 WP_004730052.1 hypothetical protein -
  OCU90_RS17805 - 81482..82138 (+) 657 WP_061023233.1 YceH family protein -
  OCU90_RS17810 - 82139..82453 (+) 315 WP_004730056.1 GIY-YIG nuclease family protein -
  OCU90_RS17815 luxP 82762..83856 (+) 1095 WP_061023235.1 substrate-binding domain-containing protein Regulator
  OCU90_RS17820 luxQ 83856..86426 (+) 2571 WP_061023236.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCU90_RS17825 - 86488..87147 (-) 660 WP_061023238.1 PilZ domain-containing protein -
  OCU90_RS17830 - 87342..87692 (+) 351 WP_017082477.1 HopJ type III effector protein -
  OCU90_RS17835 - 87809..88117 (-) 309 WP_017079638.1 DUF1289 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41109.38 Da        Isoelectric Point: 5.1616

>NTDB_id=92337 OCU90_RS17815 WP_061023235.1 82762..83856(+) (luxP) [Vibrio splendidus strain LMG 19031]
MKRLLMLLGLAVFSASALSHGTHVLNGYWEYQDYLSKFPEQKALTDKMVEAVQNHPVPLRKIQDEPITISVVYPGQQISD
YWVRNIEAFEKRLDKLRINYQINQVFTRVNADLTQTSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLANYFKEVSKPDSKYSVLYRSEGYISDARGDTFIHDVNTDTKFDLKSSFYTKSD
KDSGYQAAKISIANDKDLDFIYACATDVALGAAEAIRESGRDILVNGWGGGSAELEAIAKGDLDVTVMRMNDDTGIAMAE
AIKWDLAGLEVPTVYSGEFEVVTKDDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=92337 OCU90_RS17815 WP_061023235.1 82762..83856(+) (luxP) [Vibrio splendidus strain LMG 19031]
ATGAAACGTTTACTGATGTTGTTGGGACTTGCCGTATTTTCTGCGTCCGCTCTTTCCCATGGTACCCATGTCCTCAATGG
TTACTGGGAATACCAAGATTACCTTTCTAAATTTCCAGAGCAAAAAGCACTGACCGATAAAATGGTTGAGGCAGTGCAAA
ATCACCCCGTTCCGTTAAGAAAAATCCAAGATGAACCCATCACAATCTCTGTGGTGTATCCGGGACAACAGATCTCAGAT
TATTGGGTTCGCAATATTGAGGCTTTCGAGAAACGCCTCGATAAGTTGAGAATCAATTATCAAATAAATCAGGTGTTTAC
CCGGGTTAATGCCGATCTCACGCAAACAAGCATTTCATTGCAAGAAGCGATAGAGAACAAAACGGATTACTTGATTTTTA
CATTAGACACGACGCGCCACCGCAAGTTTATTGAGCACGTGTTGAGCTCTACTGACACCAAACTCATTCTGCAAAACATC
ACAACACCAGTGCGTGCTTGGGCTGATAGACAGCCGTTCATGTATGTGGGATTTGATCATGCGACAGGCAGTTTAAAATT
GGCAAATTACTTTAAAGAAGTGAGCAAACCAGACAGCAAATATTCTGTGTTATATCGCTCAGAGGGCTACATCAGTGATG
CTCGTGGAGATACCTTTATCCATGATGTGAACACCGATACGAAGTTTGATCTTAAGTCTTCGTTTTACACGAAATCAGAC
AAAGATAGTGGTTACCAAGCGGCTAAAATCAGCATTGCGAACGATAAGGACCTAGACTTTATCTATGCATGTGCAACCGA
TGTCGCTCTGGGCGCTGCGGAAGCCATTCGTGAATCTGGTCGAGATATCTTAGTTAATGGCTGGGGAGGCGGATCCGCTG
AACTGGAAGCCATTGCAAAGGGCGATTTAGATGTCACAGTCATGCGTATGAATGACGATACCGGTATCGCTATGGCAGAG
GCGATCAAGTGGGACCTAGCCGGATTGGAAGTTCCTACGGTTTACTCTGGTGAGTTTGAAGTTGTGACCAAAGATGATTC
ACCAGAACGTATTTCAGAACTTAAGCAGCGAGCATTTAGGTACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.388

100

0.637

Multiple sequence alignment