Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QUE82_RS07080 Genome accession   NZ_AP028059
Coordinates   1351723..1352859 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain NARUSE     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346723..1357859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE82_RS07055 (BSNN_13440) - 1346914..1348266 (-) 1353 WP_014478984.1 IS1182 family transposase -
  QUE82_RS07060 (BSNN_13450) bstD 1348405..1348869 (-) 465 WP_014479541.1 DinB family protein -
  QUE82_RS07065 (BSNN_13460) yjoB 1349018..1350118 (+) 1101 Protein_1326 ATPase YjoB -
  QUE82_RS07075 (BSNN_13490) - 1351405..1351578 (+) 174 Protein_1328 ATPase -
  QUE82_RS07080 (BSNN_13500) rapC 1351723..1352859 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  QUE82_RS07085 (BSNN_13510) phrA 1352849..1352983 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  QUE82_RS07090 (BSNN_13520) yjpA 1353014..1353260 (-) 247 Protein_1331 YciI family protein -
  QUE82_RS07095 (BSNN_13530) xlyB 1353381..1354334 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  QUE82_RS07100 (BSNN_13540) yjqA 1354374..1354751 (-) 378 WP_014479546.1 PH domain-containing protein -
  QUE82_RS07105 (BSNN_13550) pghB 1354856..1355458 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  QUE82_RS07110 (BSNN_13560) xpdC 1355535..1356371 (+) 837 WP_003245071.1 manganese catalase family protein -
  QUE82_RS07115 (BSNN_13570) xkdA 1356415..1357011 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  QUE82_RS07120 (BSNN_13580) xre 1357174..1357515 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=92335 QUE82_RS07080 WP_015252291.1 1351723..1352859(+) (rapC) [Bacillus subtilis subsp. natto strain NARUSE]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=92335 QUE82_RS07080 WP_015252291.1 1351723..1352859(+) (rapC) [Bacillus subtilis subsp. natto strain NARUSE]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418

Multiple sequence alignment