Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU90_RS16160 Genome accession   NZ_AP025508
Coordinates   3595022..3596026 (+) Length   334 a.a.
NCBI ID   WP_017083807.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3590022..3601026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS16145 - 3590408..3591697 (-) 1290 WP_017077602.1 malic enzyme-like NAD(P)-binding protein -
  OCU90_RS16150 rpmE 3592030..3592248 (-) 219 WP_004729688.1 50S ribosomal protein L31 -
  OCU90_RS16155 priA 3592580..3594781 (+) 2202 WP_061023587.1 primosomal protein N' -
  OCU90_RS16160 cytR 3595022..3596026 (+) 1005 WP_017083807.1 DNA-binding transcriptional regulator CytR Regulator
  OCU90_RS16165 ftsN 3596149..3596688 (+) 540 WP_029222060.1 cell division protein FtsN -
  OCU90_RS16170 hslV 3596911..3597459 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  OCU90_RS16175 hslU 3597518..3598858 (+) 1341 WP_017077598.1 HslU--HslV peptidase ATPase subunit -
  OCU90_RS16180 - 3599014..3599931 (+) 918 WP_017080187.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU90_RS16185 rraA 3600005..3600523 (+) 519 WP_061023589.1 ribonuclease E activity regulator RraA -
  OCU90_RS16190 zapB 3600635..3600877 (-) 243 WP_004729696.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36587.11 Da        Isoelectric Point: 6.4911

>NTDB_id=92330 OCU90_RS16160 WP_017083807.1 3595022..3596026(+) (cytR) [Vibrio splendidus strain LMG 19031]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQETKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=92330 OCU90_RS16160 WP_017083807.1 3595022..3596026(+) (cytR) [Vibrio splendidus strain LMG 19031]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACGGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCGACTCGTAAACGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTACTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCCGCTGTAGAGAATGACTACCTCGTTCTACTGGGTGACAGTGGTCAACAAAAGAAGCGTGAGTCTTCATT
TGTTAACTTGGTCTTCACAAAACAAGCAGACGGTATGCTACTGCTTGGCACTGATCATCCGTTTGATGTCAGTAAGCCTG
AGCAAAAGAATTTACCGCCAATGGTTATGGCGTGTGAATTCGCACCTGAGCTTGAACTGCCAACGGTTCACATCGACAAC
CTAACCTCTGCATTTGAAGCCGTGAATTACCTCGCTCAGTTAGGTCATAAGCGCATCGCTCAGATCTCTGGACCAACGAC
TGCAACCCTGTGTAAGTTCCGTCAACAAGGCTACCAACAAGCATTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACTGTGGGCGATTTCACCTTTGAAGCGGGTGCGCAAGCGGTTCGTCAATTACTAGCACTTCCTGAACAACCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCGATTGGTGCGATTCAAGAAACGAAGAAGCTAGGTTTACGCGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGCTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTAGTCGTTAGAGGCAGCACCGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.458

99.401

0.889
  cytR Vibrio parahaemolyticus RIMD 2210633

87.688

99.701

0.874

Multiple sequence alignment