Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU90_RS14520 Genome accession   NZ_AP025508
Coordinates   3288986..3289504 (-) Length   172 a.a.
NCBI ID   WP_004735501.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3283986..3294504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS14500 rpsP 3284531..3284779 (-) 249 WP_004735508.1 30S ribosomal protein S16 -
  OCU90_RS14505 ffh 3284992..3286386 (-) 1395 WP_004735506.1 signal recognition particle protein -
  OCU90_RS14510 - 3286587..3287381 (+) 795 WP_017079954.1 inner membrane protein YpjD -
  OCU90_RS14515 - 3287509..3288780 (+) 1272 WP_054541869.1 HlyC/CorC family transporter -
  OCU90_RS14520 luxS 3288986..3289504 (-) 519 WP_004735501.1 S-ribosylhomocysteine lyase Regulator
  OCU90_RS14525 - 3289529..3290179 (-) 651 WP_004735500.1 hypothetical protein -
  OCU90_RS14530 gshA 3290190..3291758 (-) 1569 WP_061022523.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18936.66 Da        Isoelectric Point: 4.5831

>NTDB_id=92317 OCU90_RS14520 WP_004735501.1 3288986..3289504(-) (luxS) [Vibrio splendidus strain LMG 19031]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92317 OCU90_RS14520 WP_004735501.1 3288986..3289504(-) (luxS) [Vibrio splendidus strain LMG 19031]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGGATCC
ATACTCTAGAGCACCTATACGCAGGATTTATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATTTCACCG
ATGGGTTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACGCCTTCAGAGCAACAAGTGGCAGACGGTTGGTTGGCTGC
AATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAGATCCCTGAGCTGAACGAGTATCAATGTGGTACTGCGGCAATGC
ATTCTTTGGATGAAGCTAAAGATATCGCTAATGCGATCATCGCTGCCGGTATCTCTGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCGATGCTGAAAGAGCTTAAGATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment